Locus 674

Sequence ID 3R_DroMel_CAF1
Location 2,444,038 – 2,444,153
Length 115
Max. P 0.692966
window1067

overview

Window 7

Location 2,444,038 – 2,444,153
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.98
Mean single sequence MFE -43.72
Consensus MFE -27.18
Energy contribution -28.70
Covariance contribution 1.52
Combinations/Pair 1.08
Mean z-score -3.05
Structure conservation index 0.62
SVM decision value 0.33
SVM RNA-class probability 0.692966
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2444038 115 - 27905053
AUAAACCACUUAGGCUGGGGCCCCGAA---AUUGGGCGUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCA-GCAGCACUUUUGGCUGCCGCUGCACUCGCAGCGCAUAAAUC
............((((((.((((((..---..)))).))..))))))....((-((((...........))))))((.-(((((.(....)))))).(((((....)))))))....... ( -42.10)
>DroSec_CAF1 3045 115 - 1
AUAAACCACUUAGGCUGGGGCCCCGAA---AGUGGGCUUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCA-GCAGCACUGUUGGCUGCCGCUGCACUCGCAGCGCAUAAAUC
............((((((((((((...---.).)))))...))))))....((-((((...........))))))((.-(((((.(....)))))).(((((....)))))))....... ( -47.90)
>DroEre_CAF1 4413 116 - 1
AUAAACCACUUAGGCUGGGGCCCCGAA---AGUGGGCGUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCAGGCAGCACUUUUGACUGCCGCUGCACUCGCAGCGCAUAAAUC
............((((((.(((((...---.).))))....))))))....((-((((...........))))))((.(((((((....)).)))))(((((....)))))))....... ( -47.40)
>DroYak_CAF1 4609 116 - 1
AUAAACCACUUAGGCUGGGGCCCCGAA---AGUGGGCGUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCAGGCAGCACUUUUGGCUGCCGCUGCACUACCAGCGCAUAAAUC
............((((((.(((((...---.).))))....))))))....((-((((...........))))))((.((((((.(....)))))))((((......))))))....... ( -46.40)
>DroAna_CAF1 4379 112 - 1
AUAAACCACUUAGGCUGCGACCGCAAAAAAAGGAGGCGUGGCCAGCCACUUUAGAGAGC-------UACCUUGAAGGC-AGAGCACUUUUGCCACACGCUGCACUCGCAGCGCAUAAAUC
.............(((((((..(((....((((.(((((((....))))((....))))-------).))))...(((-((((...)))))))......)))..)))))))......... ( -34.80)
>consensus
AUAAACCACUUAGGCUGGGGCCCCGAA___AGUGGGCGUGGCCAGCCACUUUU_CGAGCAUUCUCUUACCUCGAAGCA_GCAGCACUUUUGGCUGCCGCUGCACUCGCAGCGCAUAAAUC
............((((((.((((..........))))....)))))).......((((...........))))..((..(((((.......))))).(((((....)))))))....... (-27.18 = -28.70 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:59 2006