Locus 6739

Sequence ID 3R_DroMel_CAF1
Location 17,758,656 – 17,758,747
Length 91
Max. P 0.564695
window10944

overview

Window 4

Location 17,758,656 – 17,758,747
Length 91
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 87.61
Mean single sequence MFE -28.22
Consensus MFE -21.01
Energy contribution -21.21
Covariance contribution 0.20
Combinations/Pair 1.10
Mean z-score -1.59
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.564695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17758656 91 + 27905053
UCCACUUGUUGCACACACCGAAACACCGAAAGUGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU-----------------GUUUAGGUUGCCAGCG-AAAAAUU
..........((((((...(((...((((((.........)))))).)))))))))...((((((((.-----------------.........)))))))-)...... ( -27.30)
>DroSec_CAF1 47288 91 + 1
UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU-----------------GUUUAGGUUGCCAGCG-UAAAAUU
........((((.(((((.(((...((((((.........)))))).))))))))......((((((.-----------------.........)))))))-))).... ( -26.20)
>DroSim_CAF1 47728 91 + 1
UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU-----------------GUUUAGGUUGCCAGCG-UAAAAUU
........((((.(((((.(((...((((((.........)))))).))))))))......((((((.-----------------.........)))))))-))).... ( -26.20)
>DroEre_CAF1 50055 92 + 1
UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUUCGGUUCGUGUGCUCGUUGUUGGCU-----------------GCUUAGGCUGCCAGCUACAAAAUU
..........(((((((((((((..((....).).......)))))))..))))))..((.((((((.-----------------((....)).)))))).))...... ( -29.70)
>DroYak_CAF1 50767 109 + 1
UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUUCGGUUCGUGUGCUCGUUGCUAGCUGUGUGGUGCUGUGCUGUGCUUAGGUUGCCAGCUACAAAAUU
.((((..(((((((((((.((...((((((((........))))))))))))))).....))).)))...))))...(((((((.((.......)))))).)))..... ( -31.70)
>consensus
UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU_________________GUUUAGGUUGCCAGCG_CAAAAUU
..........((((((...(((...((((((.........)))))).))))))))).....((((((...........................))))))......... (-21.01 = -21.21 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:45 2006