Locus 6736

Sequence ID 3R_DroMel_CAF1
Location 17,750,161 – 17,750,259
Length 98
Max. P 0.678096
window10939

overview

Window 9

Location 17,750,161 – 17,750,259
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -29.90
Consensus MFE -22.10
Energy contribution -23.14
Covariance contribution 1.04
Combinations/Pair 1.09
Mean z-score -2.08
Structure conservation index 0.74
SVM decision value 0.30
SVM RNA-class probability 0.678096
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17750161 98 - 27905053
GCUUUUGGCCAUUUGGAGUGGGAAUCGGGGCUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA-GGGGGAU
.(((((((((((((((((((((........)))))).)))))..(((..((((.(((((....))))).))))....)))....))).)))-))))... ( -26.90)
>DroSec_CAF1 39102 98 - 1
CCUUUUGGCCAUUUGGAGUGGGAAUCGGGACUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA-GGGGGAG
((((((((((((((((((((((........)))))).)))))..(((..((((.(((((....))))).))))....)))....))).)))-))))).. ( -29.60)
>DroSim_CAF1 38928 98 - 1
CCUUUUGGCCAUUUGGAGUUGGAAUCGGGUUUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA-GGGGGAG
(((((((((((.((...(((....((.((((((((...((.(((((......))))).))...)))))))).)).)))...)).))).)))-))))).. ( -29.00)
>DroEre_CAF1 41487 98 - 1
CCUUUUGGCCAACUGGAGUGGGAUUCAGGUCUUACCACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAGGCAGAAGUUGGACAA-GGGGCAA
(((((((.((((((.(.(((((((....)))))))).((((........))))...............(((....)))...)))))).)))-))))... ( -31.90)
>DroYak_CAF1 41814 99 - 1
CCUUUUGGCCAUCUGGAGUGGGUAUCGGGGCUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACAAAGGGGGAG
(((((((.(((((((((((((((......))))))).)))))..(((..((((.(((((....))))).))))....)))....))).))))))).... ( -32.10)
>consensus
CCUUUUGGCCAUUUGGAGUGGGAAUCGGGGCUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA_GGGGGAG
((((.((((((((((((((((((......))))))).)))))..(((..((((.(((((....))))).))))....)))....))).))).))))... (-22.10 = -23.14 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:40 2006