Locus 673

Sequence ID 3R_DroMel_CAF1
Location 2,441,707 – 2,441,812
Length 105
Max. P 0.671174
window1066

overview

Window 6

Location 2,441,707 – 2,441,812
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.11
Mean single sequence MFE -37.70
Consensus MFE -23.14
Energy contribution -25.42
Covariance contribution 2.28
Combinations/Pair 1.29
Mean z-score -1.74
Structure conservation index 0.61
SVM decision value 0.29
SVM RNA-class probability 0.671174
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2441707 105 - 27905053
----------UUCCAUUUAUACAG-----GCGGGCUGCUGUCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGCCUCUGACCGAGAGCAUUGAGGCCCAGGCAAGCAGAAACUUGGCAAAC
----------...........(((-----(....(((((..((.(((..((..(((((....)))))..))(((((....(....)....))))))))))..)))))...))))...... ( -34.00)
>DroSec_CAF1 1166 105 - 1
----------UACUAUUUAUACAG-----GCGGGCUGCUGCCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGGCUCUGACCGAGAGCAUUGAGGCCCAGCCAAGCAGAAACUUGGCAAAC
----------..............-----..(((((..(((.(.(((.(((((((((..((....))..))))))))).))).).)))....))))).((((((......)))))).... ( -45.20)
>DroEre_CAF1 2209 105 - 1
----------UACUAUUUAUACAG-----GCGGGCUGCUGCCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGGCUCUGACCGAGAGCAUUGAGACCCAGCCAAGCAGAAACUUGGCAAAC
----------...........(((-----((((((....))))))((.(((((((((..((....))..))))))))).)).......))).......((((((......)))))).... ( -42.80)
>DroYak_CAF1 2319 105 - 1
----------UACAAUUUAUACAG-----CCGGGCUGCUGCCCGUGGAUAGAGCUGGUUCCGACUGGUCCUGGCUCUGAGCGAGAGCAUUGAGGCUCAUCCGAGCAGAAACUUGGCAAAC
----------.............(-----(((((...((((...((((((((((..(..((....))..)..)))))......((((......))))))))).))))...)))))).... ( -41.00)
>DroAna_CAF1 1793 112 - 1
UGAGCCCCUUUUCCCAGUACAUAGGCUUGGCCAGCUUCUA-CCAUUGCUGCAGCC-------UCUGUUUCGGACUCUGACCAAAAGCAUUGAAACUCAACGAAGCAGAAACUUGGCAAAC
...(((.................((((..((.(((.....-.....)))))))))-------((((((((((.......)).......(((.....))).)))))))).....))).... ( -25.50)
>consensus
__________UACCAUUUAUACAG_____GCGGGCUGCUGCCCGUGGAUAGAGCCGGUUCCGACUGGUCCUGGCUCUGACCGAGAGCAUUGAGGCCCAGCCAAGCAGAAACUUGGCAAAC
...............................(((((..(((...(((.(((((((((..((....))..))))))))).)))...)))....))))).((((((......)))))).... (-23.14 = -25.42 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:58 2006