Locus 672

Sequence ID 3R_DroMel_CAF1
Location 2,439,527 – 2,439,647
Length 120
Max. P 0.553780
window1065

overview

Window 5

Location 2,439,527 – 2,439,647
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 94.92
Mean single sequence MFE -42.90
Consensus MFE -35.20
Energy contribution -35.87
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.17
Structure conservation index 0.82
SVM decision value 0.04
SVM RNA-class probability 0.553780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2439527 120 + 27905053
GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCACAACCACAACUUCUGGGCCAACGUCGAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGAGUGGG
.((.(((((((.............(((....)))...........((((..(((((((((((((((((.((....)).))))))..))))).)))))).)))).))))))).))...... ( -43.80)
>DroSec_CAF1 5949 114 + 1
GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCA------CAACUUCUGGGGCAACGUCGAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGCGUGGG
(((.(((((((.............(((....))).....(((------(..((((((..(((((((((.((....)).)))))))...))..)))))).)))).))))))).)))..... ( -45.00)
>DroSim_CAF1 6072 114 + 1
GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCA------CAACUUCUGGGGCAACGUCAAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGAGUGGG
.((.(((((((.............(((....))).....(((------(..((((((.(....).....((((..((((...))))..)))))))))).)))).))))))).))...... ( -39.90)
>consensus
GCCACAGUUGCAUAAAAUUGCAUACGGAAAACUGAACCACCA______CAACUUCUGGGGCAACGUCGAUGGCUGCGACGACGUUGUGGCUACGGAAGAGUGGAGCAGCUGCGGAGUGGG
.((.(((((((.............(((....)))..((((...........((((((..(((((((((.((....)).))))))))).....)))))).)))).))))))).))...... (-35.20 = -35.87 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:57 2006