| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,654,543 – 17,654,651 |
| Length | 108 |
| Max. P | 0.715281 |
| Location | 17,654,543 – 17,654,651 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.29 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -18.91 |
| Energy contribution | -18.58 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17654543 108 + 27905053 UGUCUUUGUUGCUGCUGCUUAUGCAAACGCAUGGGGCAUGUCUCCCGCAACUGCAGCGACUCC--AACUCCUGCACUGCAACUCAUCAUCCAGGUUUUAUAUUUCCAACU .......(((((((((((..((((....))))((((......)))))))...))))))))...--....((((...((........))..))))................ ( -25.50) >DroSec_CAF1 49559 105 + 1 UGUAUUUGUUGCUGCUGCUUAUGCGAACGCAUGGGGCAUGUCUCUCGCAACUGCAGUGACUCC--AACU-CUGCACUGCAACUCAUCAU-CAGGUAUUUUAUUUCCAGU- .(((((((((((.(((((((((((....)))).))))).)).....)))))(((((((.(...--....-..)))))))).........-.))))))............- ( -24.70) >DroSim_CAF1 50058 103 + 1 UGUCUUUGUUGCUUCUGCUUAUGCAAACGCAUGGGGCAUGUCUCCCGCAACUGCAGUGACUCC--AACUCCUGCACUGCAACUCA---U-CAGGUUUUUUAUUUCCAAU- .......(((((........((((....))))((((......)))))))))(((((((.(...--.......)))))))).....---.-..((..........))...- ( -23.90) >DroEre_CAF1 50885 102 + 1 UGUCUUUGUUGCUGCUGCUUAUGCAAACGCAUGGGGCAUGUCUCCCGCAACUGCAGUGACUCC--AACUCCUGCACUGCAACUCGUGAU-CCAG----UUGUUUCCAAU- .......((..(((((((..((((....))))((((......)))))))...))))..))..(--((((....(((........)))..-..))----)))........- ( -27.50) >DroWil_CAF1 56600 91 + 1 UGUUGUUGUUGUUGUUGCUUAUGCAAACGCAUGGGGCAUGUCUCCCGCAACUCUAAUGACUCCCCAACUCCAACGC--CAACUUUAACU-UCAA---------------- .((((..((((.(((((...((((....))))((((...(((...............))).)))).....))))).--))))..)))).-....---------------- ( -24.16) >DroYak_CAF1 55222 102 + 1 UGUCUUUGUUGCUGCUGCUUAUGCAAACGCAUGGGGCAUGUCUCCCGCAACUGCAGUGACUCC--AACUCCUACACUGCAACUUUUAAU-CCAG----UUAUUUCCAAU- .......(((((((((((....)))...))).((((......)))))))))(((((((.....--........))))))).........-....----...........- ( -23.92) >consensus UGUCUUUGUUGCUGCUGCUUAUGCAAACGCAUGGGGCAUGUCUCCCGCAACUGCAGUGACUCC__AACUCCUGCACUGCAACUCAUAAU_CAAG____UUAUUUCCAAU_ .......(((((((((((..((((....))))((((......)))))))...)))))))).................................................. (-18.91 = -18.58 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:11 2006