Locus 6708

Sequence ID 3R_DroMel_CAF1
Location 17,641,914 – 17,642,008
Length 94
Max. P 0.800275
window10902

overview

Window 2

Location 17,641,914 – 17,642,008
Length 94
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 86.13
Mean single sequence MFE -21.33
Consensus MFE -19.52
Energy contribution -19.68
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.91
SVM decision value 0.61
SVM RNA-class probability 0.800275
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17641914 94 - 27905053
AUGCUACGAGUACAUGGCUCAAGUGCCAUCGUUGUUCCGACUACGUCGGCAUAUGGCCAUCCGCCUUCACUCCU----------------UCAAUCCCUCACU---GCUCCAC
.......(((((.(((((.((.(((((..(((.((....)).)))..))))).)))))))..(......)....----------------............)---))))... ( -22.30)
>DroSec_CAF1 36729 94 - 1
AUGCUACGAGUACACGGCUCAAGUGCCAUCGUUGUUCCGACUACGUCGGCAUAUGGCCAUCCGCCUUCACUCCU----------------UCAAUCCCUCACU---GAUCCAC
.......((((....(((.((.(((((..(((.((....)).)))..))))).)))))....(....)))))..----------------.............---....... ( -20.00)
>DroSim_CAF1 36555 94 - 1
AUGCUACGAGUACACGGCUCAAGUGCCAUCGUUGUUCCGACUACGUCGGCAUAUGGCCAUCCGCCUUCACUCCU----------------UCAAUCCCUCACU---GCUCCAC
.......(((((...(((.((.(((((..(((.((....)).)))..))))).)))))....(......)....----------------............)---))))... ( -21.20)
>DroEre_CAF1 38491 102 - 1
AUGCUACGAGUACACGGCUCAAGUGCCAUCGUUGUUCCGACUACGUCGGCAUAUGGCCAUCCGUCUUCACUCCUUCAC--------UCCUCCAAUGCCCCACU---GCUCCCC
.......(((((...(((.((.(((((..(((.((....)).)))..))))).)))))....((....))........--------................)---))))... ( -22.20)
>DroYak_CAF1 41875 110 - 1
AUGCUACGAGUACACGGCUCAAGUGCCAUCGUUGUUCCGACUACGUCGGCAUAUGGCCAUCCGCCUUCACUCCUUUACUCCAUCGCUCCUUCAAUCCCUCACU---GCUCCAC
.......(((((...(((.((.(((((..(((.((....)).)))..))))).)))))....((....................))................)---))))... ( -22.55)
>DroAna_CAF1 45052 94 - 1
AUGCUACGAGUACACGGCUCAAGUGCCAUCGUUGUUCCGACUACGUCGGCAUAUGGCCAUCCUUUUUCACUCU---AC----------------UCCUUCCCUCCACCUCCAC
.......(((((...(((.((.(((((..(((.((....)).)))..))))).)))))..............)---))----------------))................. ( -19.73)
>consensus
AUGCUACGAGUACACGGCUCAAGUGCCAUCGUUGUUCCGACUACGUCGGCAUAUGGCCAUCCGCCUUCACUCCU________________UCAAUCCCUCACU___GCUCCAC
.......((((....(((.((.(((((..(((.((....)).)))..))))).)))))....(....)))))......................................... (-19.52 = -19.68 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:04 2006