Locus 669

Sequence ID 3R_DroMel_CAF1
Location 2,438,367 – 2,438,461
Length 94
Max. P 0.518891
window1062

overview

Window 2

Location 2,438,367 – 2,438,461
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 93.57
Mean single sequence MFE -15.00
Consensus MFE -14.61
Energy contribution -14.17
Covariance contribution -0.44
Combinations/Pair 1.11
Mean z-score -1.32
Structure conservation index 0.97
SVM decision value -0.03
SVM RNA-class probability 0.518891
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2438367 94 + 27905053
GCAUUGAUAUGCAAAAGCACUCCCUUUAACUCCCAACCUCACAAUUCACAUUUCACCUACAUUUCUUGAGUCCUAUGGGGUUACGAAAUGUUAU
((((....))))..............................................(((((((.(((.(((...))).))).)))))))... ( -13.60)
>DroSec_CAF1 4819 92 + 1
GCAUUGAUAUGCAAAAACACUCCCUUAAACUC-CAACCUCACAAUUCGCAUUUCACCUACAUUUCUUGAGUCCU-UAGGGCUGCGAAAUGUUAU
((((....))))....................-.......(((.(((((..........((.....))(((((.-..)))))))))).)))... ( -15.70)
>DroSim_CAF1 4927 92 + 1
GCAUUGAUAUGCAAAAACACUCCCUUAAACUC-CAGCCUCACAAUUCGCAUUUCACCUACAUUUCUUGAGUCCU-UAGGGCUGCGAAAUGUUAU
((((....))))....................-.......(((.(((((..........((.....))(((((.-..)))))))))).)))... ( -15.70)
>consensus
GCAUUGAUAUGCAAAAACACUCCCUUAAACUC_CAACCUCACAAUUCGCAUUUCACCUACAUUUCUUGAGUCCU_UAGGGCUGCGAAAUGUUAU
((((....))))...................................(((((((.....((.....))(((((....)))))..)))))))... (-14.61 = -14.17 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:54 2006