| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,574,477 – 17,574,591 |
| Length | 114 |
| Max. P | 0.650152 |
| Location | 17,574,477 – 17,574,591 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.07 |
| Mean single sequence MFE | -36.23 |
| Consensus MFE | -23.81 |
| Energy contribution | -24.95 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17574477 114 + 27905053 CAUUGACUCCAGAAUCACAUCCAACUUCGCUUGGUUGGAAGUUAAUCGUGAUCCAGUGCUCAACUGGAUCGAGGAUU------CCUUAAAAGAGAACGGCAGUCCCUCUCUGACCUCAUC ....((((((.(((((((.(((((((......))))))).))......(((((((((.....)))))))))..))))------)(((....)))...)).))))................ ( -34.10) >DroSec_CAF1 9620 114 + 1 CAUUGACUCCAGAAUCACAUUCAACUUCGCUUGGUUGGAAGUUAAUCGUGAUCCAGUGCUCAACUGGAUCGAGGAUU------CCUUUAGGGAGAACGGCAGUCCCUCUCUGACCUCAUC .(((((((((.((((...))))((((......)))))).)))))))...((((((((.....))))))))((((...------...((((((((.((....))..))))))))))))... ( -35.50) >DroSim_CAF1 8908 114 + 1 CAUUGACUCCAGAAUCACAUCCAACUUCGCUUGGUUGGAAGUUAAUCGUGAUCCAGUGCUCAACUGGAUCGAGGAUU------CCUUUAGGGAGAACGGCAGUCCCUCUCUGACCUCAUC .(((((((...........(((((((......))))))))))))))...((((((((.....))))))))((((...------...((((((((.((....))..))))))))))))... ( -37.70) >DroEre_CAF1 9072 114 + 1 CAUUGAGUCCAGAAUCGCAACCAACUUCGCUUGGUUGGCAGUUAAUCGCGAUCCAGUGUUCAACUGGAUCGAAGCUU------CCAUUAGGGAGAACGGCAGUCCCUCGUUGACCUCGUC ....(((..(((.....(((((((......)))))))((.(((.....(((((((((.....)))))))))...(((------((....)))))))).)).........)))..)))... ( -36.90) >DroYak_CAF1 11662 114 + 1 CAUUGACUCGAGAAUCACAAGCAACUUCGCUUGGUUGGAAGUGAAUCGUGAUCCAGUGCUCAACUGGAUCGAAGAUU------CCCUAAGGGAGAACGGCAGUCCCUCCUUGACCGCGUC ....(((.(........(((((......)))))...((.((.(((((.(((((((((.....)))))))))..))))------).)).((((((.((....))..))))))..))).))) ( -36.90) >DroPer_CAF1 9143 120 + 1 CGUAGACUCCCGAGUAAAAGCCAAUCUCGAUUGGCUGGCCGUCCAUCGUGAUCCUCUGAUCAGUUGGUUGGCUGCCUACAACACAGUCAAGGACAAUGGCAGUCCCGCCCUGACGACAUC .(((((((....)))...(((((((....)))))))(((((.(((.(.(((((....)))))).))).)))))..))))......((((.((((.......)))).....))))...... ( -36.30) >consensus CAUUGACUCCAGAAUCACAUCCAACUUCGCUUGGUUGGAAGUUAAUCGUGAUCCAGUGCUCAACUGGAUCGAGGAUU______CCUUUAGGGAGAACGGCAGUCCCUCUCUGACCUCAUC ......((((.((...((.(((((((......))))))).))...)).(((((((((.....)))))))))...................))))...(((((.......))).))..... (-23.81 = -24.95 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:29 2006