| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,572,177 – 17,572,289 |
| Length | 112 |
| Max. P | 0.617276 |
| Location | 17,572,177 – 17,572,289 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.98 |
| Mean single sequence MFE | -37.87 |
| Consensus MFE | -22.07 |
| Energy contribution | -22.93 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17572177 112 - 27905053 CAGUUCUCCGGUGGUGGACUCAAAAUCGGAGACGAUGAAGGCCACCAGGUAGGUGGACAUCUUUGGCGUCGUCUGGAAAGCAGUGACUCCCGAGCUGGAAGGCGAAACCGUC ..((..((((((((((..((....((((....))))..)).(((((.....))))).)))).((((.((((.(((.....)))))))..))))))))))..))......... ( -39.30) >DroPse_CAF1 6993 97 - 1 CAGCUCGCCGCCUGUCGACUCAAAGUCGGACACGAUGAAGGCCACCAGAUAGGUGGACAUCUUCGGGGUGGUCUGGAAGGCGGUAACACCAGAGCUA--------------- .((((((((((((((((((.....))).))).......((((((((.((.((((....))))))..))))))))...))))))).......))))).--------------- ( -41.11) >DroGri_CAF1 9043 110 - 1 CAUCUCCCCGCUUGUGAACUCAAAGUCCGAAACAAUGAAGGCUAUCAAAUAGGUGGACAUAGGUGGCGUUGUUUGGAAAACUGUCACACCAGAUCUGCGAA--UAAAUGGUU .....(((((((((((...(((..((.....))..)))...(((((.....))))).)))))))))(((.((((((............))))))..)))..--.....)).. ( -21.70) >DroSim_CAF1 6639 112 - 1 UAGUUCUCCGGUGGUGGACUCAAAAUCGGAGACGAUAAAGGCCACCAGGUAGGUGGACAUCUUAGGCGUCGUCUGGAAAGCAGUGACACCCGAGCUGGAAGGCGAAACCGUC ..((..((((((((((........((((....)))).....(((((.....))))).))))(..((.((((.(((.....))))))).))..)))))))..))......... ( -39.60) >DroYak_CAF1 9491 112 - 1 CAGUUCUCCGGUGGUGGACUCAAAAUCGGAGACGAUGAAGGCCACCAGGUAGGUGGACAUCUUGGGCGUCGUCUGGAAGACGGUGACUCCCGAACUGGAAGGCGAAACCAUC ..((..((((((((((..((....((((....))))..)).(((((.....))))).))))(((((.((((.(((.....))))))).)))))))))))..))......... ( -44.40) >DroPer_CAF1 6990 97 - 1 CAGCUCGCCGCCUGUCGACUCAAAGUCGGACACGAUGAAGGCCACCAGAUAGGUGGACAUCUUCGGGGUGGUCUGGAAGGCGGUAACACCAGAGCUA--------------- .((((((((((((((((((.....))).))).......((((((((.((.((((....))))))..))))))))...))))))).......))))).--------------- ( -41.11) >consensus CAGCUCUCCGCUGGUGGACUCAAAAUCGGAGACGAUGAAGGCCACCAGAUAGGUGGACAUCUUCGGCGUCGUCUGGAAAGCGGUGACACCAGAGCUGGAAG__GAAACCGUC ((((((.((((.((((........((((....)))).....(((((.....))))).)))).)))).((...(((.....)))..))....))))))............... (-22.07 = -22.93 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:27 2006