| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,536,883 – 17,536,977 |
| Length | 94 |
| Max. P | 0.570510 |
| Location | 17,536,883 – 17,536,977 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 64.37 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -4.86 |
| Energy contribution | -4.72 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.18 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17536883 94 + 27905053 UCUCCCA--GAGGAACAACAAC--AGCAGCAGCAUCAGC--GUG--GC---AUCA-GCGCAGCAACUGCUGC-AAUGACACAAAAGUGAGUUUUGGGAACUGGCAAA ..(((((--(((..........--.(((((((.....((--((.--..---....-)))).....)))))))-.....(((....)))..))))))))......... ( -29.50) >DroPse_CAF1 54900 77 + 1 UCUUCCA--GAGGAAAAGCCAG--AC--CCAACAACUGC--CUG---------------------CUGUUGC-AGUGACACAAAAGUGAGUUUUGGGAACUGGCAAA ..((((.--..))))..(((((--.(--((((.((((..--(((---------------------(....))-))...(((....))))))))))))..)))))... ( -26.30) >DroYak_CAF1 40692 77 + 1 UCUCCCA--GAGGAACAACAAC--A---------------------GC---AUCA-GCGCAACAACUGCUGC-AAUGACACAAAAGUGAGUUUUGAGAACUGGCAAA ....(((--(.(((((......--.---------------------((---(.((-(........))).)))-.....(((....))).))))).....)))).... ( -14.60) >DroMoj_CAF1 46052 93 + 1 UCUCUCUCGCAUGCUCUUCAGC--AGCUGCUGCUGCUGGUG-CU--GCUGUCUCGCUCAC---------AGCAAAUGACACAAAAGUGAGUUUUGGGAAUUGGCAAA ((((.(((((..((...(((((--(((....)))))))).)-)(--(((((.......))---------))))............)))))....))))......... ( -32.30) >DroAna_CAF1 45133 92 + 1 UCUCCCA--GAGGAGCUGCAACACAGCAACAGCGACAGAUA-CU--GC---------AGCAGCAACGGCUGC-AAUGACACAAAAGUGAGUUUUGGGAACUGGCAAA ..(((((--(((..((((.....))))..(((((.......-.)--))---------.(((((....)))))-..)).(((....)))..))))))))......... ( -26.30) >DroPer_CAF1 59073 89 + 1 UCUUCCA--GAGGAAAAGCCAG--AC--CCAACAACUGC--CUGCUGC---------UGCUGCUGCUGUUGC-AGUGACACAAAAGUGAGUUUUGGGAACUGGCAAA ..((((.--..))))..(((((--.(--((((.((((..--((..((.---------((..(((((....))-)))..))))..))..)))))))))..)))))... ( -32.10) >consensus UCUCCCA__GAGGAACAGCAAC__AG__CCAGCAACUGC___UG__GC_________CGCAGCAACUGCUGC_AAUGACACAAAAGUGAGUUUUGGGAACUGGCAAA .....................................................................................((.(((((...))))).))... ( -4.86 = -4.72 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:08 2006