Locus 666

Sequence ID 3R_DroMel_CAF1
Location 2,436,454 – 2,436,573
Length 119
Max. P 0.964969
window1055

overview

Window 5

Location 2,436,454 – 2,436,573
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.49
Mean single sequence MFE -32.90
Consensus MFE -32.34
Energy contribution -32.10
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.98
SVM decision value 1.57
SVM RNA-class probability 0.964969
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2436454 119 - 27905053
GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC-
(((.((((((((........)))))).(((((((..(((((((..((((....))))((((.....))))................)))))))....)))))))..)))))........- ( -32.10)
>DroSec_CAF1 2589 120 - 1
GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGCUGCGAUAAAUCUGUAAUGACCAGAACAGACCAACC
(((.((((((((........)))))).(((((((..(((((((...(((....)))(((((((...(((......))).))))))))))))))....)))))))..)))))......... ( -34.40)
>DroSim_CAF1 2671 119 - 1
GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGCUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC-
(((.((((((((........)))))).(((((((..(((((((...(((....)))(((((((...(((......))).))))))))))))))....)))))))..)))))........- ( -34.40)
>DroEre_CAF1 2581 119 - 1
GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAGC-
(((.((((((((........)))))).(((((((..(((((((..((((....))))((((.....))))................)))))))....)))))))..)))))........- ( -32.10)
>DroYak_CAF1 2622 118 - 1
G-UACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC-
(-(.((((((((........)))))).(((((((..(((((((..((((....))))((((.....))))................)))))))....)))))))..)).))........- ( -31.50)
>consensus
GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC_
.....(((((((........)))))))(((((((..(((((((...(((....)))(((((((...(((......))).))))))))))))))....)))))))................ (-32.34 = -32.10 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:47 2006