Locus 6635

Sequence ID 3R_DroMel_CAF1
Location 17,442,221 – 17,442,311
Length 90
Max. P 0.663134
window10803

overview

Window 3

Location 17,442,221 – 17,442,311
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.64
Mean single sequence MFE -19.35
Consensus MFE -13.30
Energy contribution -14.80
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.69
SVM decision value 0.27
SVM RNA-class probability 0.663134
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17442221 90 - 27905053
GGCGGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU
(((((((((----------(((((.(((((.(......).)))))...))))))))..(.....)............))))))................. ( -22.90)
>DroSec_CAF1 43743 90 - 1
GGCGGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU
(((((((((----------(((((.(((((.(......).)))))...))))))))..(.....)............))))))................. ( -22.90)
>DroSim_CAF1 40921 90 - 1
GGCGGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU
(((((((((----------(((((.(((((.(......).)))))...))))))))..(.....)............))))))................. ( -22.90)
>DroEre_CAF1 43143 90 - 1
GGCGGCUUU----------AGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU
((((((.((----------(.....)))((((((.((...........)))))))).....................))))))................. ( -18.40)
>DroYak_CAF1 43626 90 - 1
GUCAGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAACAACACACAUGCCGCCACCAACACAAAUGCCUU
........(----------(((((((..((((((.((...........))))))))..(.....)..........))).)))))................ ( -13.90)
>DroPer_CAF1 51364 85 - 1
---GGCAUUGGAAAUUUCGGGCGCAUAAUUUGGCCACACUAAUUAGCAGAGAGGAG---AGCGAGAGAGACAGGC--GAAAAAACCGACCGAA-------
---((..((((...((((((((.((.....)))))...((.....((.........---.)).....)).....)--))))...))))))...------- ( -15.10)
>consensus
GGCGGCUUU__________GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU
((((((.............(((.((.....))))).((((.......))))..........................))))))................. (-13.30 = -14.80 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:28 2006