Locus 6632

Sequence ID 3R_DroMel_CAF1
Location 17,439,398 – 17,439,504
Length 106
Max. P 0.961809
window10797

overview

Window 7

Location 17,439,398 – 17,439,504
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -23.23
Consensus MFE -19.59
Energy contribution -20.35
Covariance contribution 0.76
Combinations/Pair 1.07
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value 1.53
SVM RNA-class probability 0.961809
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17439398 106 - 27905053
CAUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGAUCUUGUUAGUAGCAAUAUGAGCAACAAAGGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU
........(((((.(((((.(((((.......))))).)))))............((((((.(((((((.((((......)))).))))))).))))))))))).. ( -29.80)
>DroSec_CAF1 40932 106 - 1
CGUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGACCUUGUUAGUAUCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU
........(((((.(((((.(((((.......))))).))))).............(((((.(((((((................))))))).))))).))))).. ( -19.59)
>DroSim_CAF1 38010 106 - 1
CGUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGACCUUGUUAGUAGCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUUU
........(((((.(((((.(((((.......))))).)))))............((((((.(((((((................))))))).))))))))))).. ( -23.49)
>DroEre_CAF1 40373 106 - 1
CAUGACUUAACGGACAUGAUAAUACCCUUUCCGCAAUUUAAAGACCCUGUUAGUAGCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGUCCGUUCU
........(((((((.................((.(((...((...))...))).))((((.(((((((................))))))).))))))))))).. ( -17.59)
>DroYak_CAF1 40855 106 - 1
CAUAACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUCAAGACCCUGUUUGUAGCAAUAUGAGCAACAAAUGUGUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU
........(((((.(((((.(((((.......))))).)))))............((((((.(((((((................))))))).))))))))))).. ( -25.69)
>consensus
CAUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGACCUUGUUAGUAGCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU
........(((((.(((((.(((((.......))))).)))))............((((((.(((((((................))))))).))))))))))).. (-19.59 = -20.35 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:23 2006