| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,427,921 – 17,428,030 |
| Length | 109 |
| Max. P | 0.530292 |
| Location | 17,427,921 – 17,428,030 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 88.15 |
| Mean single sequence MFE | -31.53 |
| Consensus MFE | -22.22 |
| Energy contribution | -23.67 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17427921 109 - 27905053 AUAAUAACUUGGCAGCCAGCAAAAGCUGUAGCAAGAACAACAACUGCAUAAGUGGAGAACAUGGGCGGAUACAGGGGGUUUAAAGGGGGAUUUAGGACCC-CCCAACCCA .......((((((...((((....))))..))...........((((....(((.....)))..))))...))))(((((....(((((........)))-)).))))). ( -33.50) >DroSec_CAF1 31851 110 - 1 AUAAUAACUUGGCAGCCAGCAAAAGCUGUAGCAAGAACAACAACUGCAUAAGUGGAGAACAUGGUCGGAUCCAAGGGGUUUAAAGGGGGAUUUACGACCCCCCCAACCCC ......(((((((((.((((....))))..(......).....)))).)))))(((...(......)..)))..((((((....(((((........)))))..)))))) ( -31.80) >DroEre_CAF1 31593 105 - 1 AUAAUAACUUGGCAGCAAGGAAAAGCUGUAACAAGAACAACAACUGCAUCAGUGGUGAACAUGGGCGGAUCCAGGGGUUUUUCAGGGGGAUUUAAGAACC-CCC----CA ...........(((((........))))).....(((.(((..(((.(((.(((.....))).....))).)))..))).))).(((((..........)-)))----). ( -29.30) >consensus AUAAUAACUUGGCAGCCAGCAAAAGCUGUAGCAAGAACAACAACUGCAUAAGUGGAGAACAUGGGCGGAUCCAGGGGGUUUAAAGGGGGAUUUAAGACCC_CCCAACCCA .......(((((((((........)))))..............((((....(((.....)))..))))...))))(((((....(((((.........)).)))))))). (-22.22 = -23.67 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:14 2006