Locus 662

Sequence ID 3R_DroMel_CAF1
Location 2,431,960 – 2,432,079
Length 119
Max. P 0.833532
window1049

overview

Window 9

Location 2,431,960 – 2,432,079
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.32
Mean single sequence MFE -37.30
Consensus MFE -34.12
Energy contribution -34.00
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.41
Structure conservation index 0.91
SVM decision value 0.72
SVM RNA-class probability 0.833532
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2431960 119 - 27905053
AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA-AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU
....(((((.(((...((((((....((((....(((((....((((-((.((..((((((........))))))....)).)))))))))))))))..))))))...))).).)))).. ( -37.00)
>DroSec_CAF1 144608 119 - 1
AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA-AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU
....(((((.(((...((((((....((((....(((((....((((-((.((..((((((........))))))....)).)))))))))))))))..))))))...))).).)))).. ( -37.00)
>DroSim_CAF1 138914 119 - 1
AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA-AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU
....(((((.(((...((((((....((((....(((((....((((-((.((..((((((........))))))....)).)))))))))))))))..))))))...))).).)))).. ( -37.00)
>DroEre_CAF1 140500 118 - 1
AUGGGCUACACGUGCUGCUCGAGAAUGUUUAUGGUGCCCACUGUGGA-AACUGGUAGCAGUGGA-AAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU
....(((((.(((...((((((((..((((...(..(((((((((..-..).....))))))).-..)..).(((((((....)))..)))).))))))))))))...))).).)))).. ( -40.30)
>DroYak_CAF1 134765 120 - 1
ACGGGCUACACGUGCUGCUUGAAAAUGUUUAUGGCGCCCACUGUGGAAAACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU
....(((((.(((...(((..(....((((....(((((....(((((((.(.((.(((((........))))))).)...))))))))))))))))..)..)))...))).).)))).. ( -35.20)
>consensus
AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA_AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU
....(((((.(((...((((((....((((....(((((..............(.((((((........)))))))(((....)))..)))))))))..))))))...))).).)))).. (-34.12 = -34.00 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:41 2006