| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 416,206 – 416,326 |
| Length | 120 |
| Max. P | 0.732912 |
| Location | 416,206 – 416,326 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.50 |
| Mean single sequence MFE | -26.77 |
| Consensus MFE | -25.61 |
| Energy contribution | -25.50 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 416206 120 + 27905053 UGACGAAUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUUGCCAGCCAUUAUGGUGAUGACAUUGUUAAAUGAUUGAACACAUUUUUUGUGGUGCGGCGCACAUUUAUAAAGAAUUA ......(((((((...((((.......))))((..(((((((..(((.......)))..)..(((.....(((((........)))))..)))))))))..)).)))))))......... ( -25.10) >DroSec_CAF1 81895 119 + 1 UGAUGAGUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUCGCCAGCCAUUAAGGUGAUGACAUUGUUAAAUGAUUGAACAAAUUUUAAAUGGUGCGGCGCACAUUUAUACAUAAU-A ..(((.(((((((...((((.......))))((..(((((((((((.........)))))...((((....))))..................))))))..)).))))))).)))...-. ( -27.60) >DroSim_CAF1 87574 120 + 1 CGACGAGUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUCGCCAGCCAUAAUGGUGAUGACAUUGUUAAAUGAUUGAACAAAUUUUAAAUGGUGCGGCGCACAUUUAUAUAUAAUUA ......(((((((...((((.......))))((..((((((((((((.......))))))...((((....))))..................))))))..)).)))))))......... ( -27.60) >consensus UGACGAGUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUCGCCAGCCAUUAUGGUGAUGACAUUGUUAAAUGAUUGAACAAAUUUUAAAUGGUGCGGCGCACAUUUAUAAAUAAUUA ......(((((((...((((.......))))((..((((((((((((.......))))))...((((....))))..................))))))..)).)))))))......... (-25.61 = -25.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:05 2006