| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,259,007 – 17,259,126 |
| Length | 119 |
| Max. P | 0.923989 |
| Location | 17,259,007 – 17,259,126 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.16 |
| Mean single sequence MFE | -40.10 |
| Consensus MFE | -20.67 |
| Energy contribution | -21.81 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.923989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17259007 119 - 27905053 AAAACGUUCCCAAGAGGACAGAAUGGAGGUUCCUAAGAAGUC-GCCCGAGGAACAACCAAAGGGGGCCAGCAAAUCAAGUGGAGACACUCCCUUGGAUGCCCUCUUCCAGCUGUCCACCA ...............((((((..(((..((((((..(.....-..)..))))))..)))((((((((...(((....((((....))))...)))...))))))))....)))))).... ( -41.90) >DroSec_CAF1 55615 119 - 1 AAAACGUUCCCAAGAGGACAGAAUGGAGGUUCCAAAAAAGUC-GCCAGAGGAACAGCCAAAGGGGGUCAGCAAAUCAAGUGGAGACACUCCCUUAGACGCCCUCUUCCAACUGUCCACCA ...............((((((..(((..(((((.........-......)))))..)))((((((((..........((((....)))).........))))))))....)))))).... ( -37.77) >DroSim_CAF1 57645 119 - 1 AAAACGUUCCCAAGAGGACAGAAUGGAGGUUCCAAAAAAGUC-GCCGGAGGAACAGCCAAAGGGGGUCAGCAAAUCAAGUGGAGACACUCCCUUAGAUGCCCUCUUCCAACUGUCCACCA ...............((((((..(((..(((((.........-......)))))..)))(((((((.((........((((....))))........)))))))))....)))))).... ( -38.75) >DroEre_CAF1 57462 119 - 1 AAAACGAUCCCAAGGGGACAGCAAAGAGGUCCUACAGAAGUC-GCCGGAGGAACAGCCAAAGGGAGUGAGCAAAUCAAGUGGGGACACUCCCUUGGACGCCCUCUUCCAGCUGUCCACCA .............(((((((((.....(((.((.....))..-)))((((((...(((((.((((.(((.....))).(((....))))))))))).)....)))))).))))))).)). ( -45.00) >DroYak_CAF1 78464 119 - 1 AAAGCGAUCCCAAGGCGACAGUAAAGAUGUCCCACAGAAGUC-GCCGGAGGAACAGCCAAGGGGGGUGAGCAAAUCAAGUGGAGACACUCCCUUGGACGCCCUCUUCCAGCUGUCCACCA ...(((((..(..((.((((.......))))))...)..)))-)).((.(((.((((..(((((((((..(((....((((....))))...)))..)))))))))...))))))).)). ( -46.00) >DroAna_CAF1 46082 95 - 1 AAAGGGGU-CCAAGAAAAUAGAGAACG--------GGAAGGCGACCGGAGGAGCUGCCGCUGGGGGU----------------GAUACUCCUUUGGAUGCCCUCUUCCAGUUGUCCACCA ........-...........((.(((.--------((((((((.(((((((((.((.(((.....))----------------).))))))))))).))))...)))).))).))..... ( -31.20) >consensus AAAACGUUCCCAAGAGGACAGAAAAGAGGUUCCAAAGAAGUC_GCCGGAGGAACAGCCAAAGGGGGUCAGCAAAUCAAGUGGAGACACUCCCUUGGACGCCCUCUUCCAGCUGUCCACCA ...............((((((............................((.....)).((((((((..........((((....)))).........))))))))....)))))).... (-20.67 = -21.81 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:18 2006