| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,416,081 – 2,416,179 |
| Length | 98 |
| Max. P | 0.586000 |
| Location | 2,416,081 – 2,416,179 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.77 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -16.34 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2416081 98 + 27905053 CGG--------------AGGGGAUGAAGUGGCGCAGAG--CGGGGCCGCAAA-AAGAGCUACAAAAUAGCAUAGAAAAUUAAUAAUCGCGCAAUUUUUGCGCCAGUAAACAAUGA ...--------------.........(.((((((((((--((....)))...-....((((.....)))).........................))))))))).)......... ( -23.60) >DroSec_CAF1 129336 103 + 1 CGGAG---CGG------ACGGGAUGAAGUGGCGCGAGA--AGGGGCCGCAAA-AAGAGCUACAAAAUAGCAUAGAAAAUUAAUAAUCGCGCAAUUUUUGCGCCAGUAAACAAUGA .((.(---(((------(((.(((...(((((.(....--..).)))))...-....((((.....))))..............))).)).....))))).))............ ( -24.60) >DroSim_CAF1 121255 103 + 1 CGGAG---CGG------AGGGGAUGAAGUGGCGCGAGA--AGGGGCCGCAAA-AAGAGCUACAAAAUAGCAUAGAAAAUUAAUAAUCGCGCAAUUUUUGCGCCAGUAAACAAUGA .....---...------.........(.((((((((((--(...((.((...-....((((.....))))...((..........))))))..))))))))))).)......... ( -24.30) >DroEre_CAF1 124098 100 + 1 CAG--------------AAAGGAUGAAGUGGCGCAGAGUGAGAGGCAGUAAA-AAGAGCUACAAAAUAGCAUAGAAAAUUAAUAAUCGCGCAAUUUUUGCGCCAGUAAACAAUGA ...--------------.........(.((((((((((...(..((......-....((((.....))))...((..........)))).)...)))))))))).)......... ( -19.40) >DroYak_CAF1 118315 99 + 1 CGG--------------AAAGGAUGAAGUGGAGCAGAG--AGGAGCAGCAAAAAAAAGCUACAAAAUAGCAUAGAAAAUUAAUAAUCGCGCUAUUUUUGCGCCAGUAAACAAUGA ...--------------.........(.(((.((((((--(..(((.((........((((.....))))...((..........))))))).))))))).))).)......... ( -20.00) >DroAna_CAF1 121227 105 + 1 CAGAAACCCAGACCAAAAGAAGAUGAAGUGGCG---------GGACUGCAAA-GGAGGCAACAAAAUAGCAUAGAAAAUUAAUAAUCGCGCAAUUUUUGCGCCAGUAAACAAUGA ......(((.(.(((.............)))))---------))((((....-...(....).........................(((((.....)))))))))......... ( -16.72) >consensus CGG______________AGAGGAUGAAGUGGCGCAGAG__AGGGGCCGCAAA_AAGAGCUACAAAAUAGCAUAGAAAAUUAAUAAUCGCGCAAUUUUUGCGCCAGUAAACAAUGA ..........................(.((((((((((......((.((........((((.....))))...((..........))))))...)))))))))).)......... (-16.34 = -16.87 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:27 2006