Locus 6537

Sequence ID 3R_DroMel_CAF1
Location 17,244,488 – 17,244,585
Length 97
Max. P 0.632417
window10641

overview

Window 1

Location 17,244,488 – 17,244,585
Length 97
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 94.96
Mean single sequence MFE -25.16
Consensus MFE -18.46
Energy contribution -18.50
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -2.50
Structure conservation index 0.73
SVM decision value 0.20
SVM RNA-class probability 0.632417
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17244488 97 + 27905053
AGGAAAACACAUCGAGUGCUUAUUAAUGAGCG-CUCGCCAACAAAAACCACAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGCGAAUGCCUUACGG
(((....(.(((((((((((((....))))))-))))(((((...........))----))).((((((........))))))..))).)....)))..... ( -24.40)
>DroSec_CAF1 40900 98 + 1
AGGAAAACACAUCGAGUGCUUAUUAAUGAGCGACUCGCCAACAAAAACCACAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG
(((....(((((((((((((((....))))).)))))(((((...........))----))).((((((........))))))..)))))....)))..... ( -24.90)
>DroSim_CAF1 41626 98 + 1
AGGAAAACACAUCGAGUGCUUAUUAAUGAGCGACUCGCCAACAAAAACCACAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG
(((....(((((((((((((((....))))).)))))(((((...........))----))).((((((........))))))..)))))....)))..... ( -24.90)
>DroEre_CAF1 41721 97 + 1
CAGAAAACACAUCGAGUGCUUAUUAAUGAGCG-CUCGCCAACAAAAACCAUAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG
.......(((((((((((((((....))))))-))))(((((...........))----))).((((((........))))))..)))))............ ( -26.10)
>DroYak_CAF1 63688 101 + 1
AAGAAAACACAUCGAGUGCUUAUUAAUGAGCG-UUCGCCAACAAAAACCAUAGGUUGGUUGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG
.......(((((((((((((((....))))))-))))(((((...((((...)))).))))).((((((........))))))..)))))............ ( -25.50)
>consensus
AGGAAAACACAUCGAGUGCUUAUUAAUGAGCG_CUCGCCAACAAAAACCACAGGU____UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG
.......(((((((((((((((....)))))).))))(((......(((...)))....))).((((((........))))))..)))))............ (-18.46 = -18.50 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:54 2006