| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,411,434 – 2,411,541 |
| Length | 107 |
| Max. P | 0.917352 |
| Location | 2,411,434 – 2,411,541 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.38 |
| Mean single sequence MFE | -30.51 |
| Consensus MFE | -26.58 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2411434 107 + 27905053 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAUGGC------------ ...((.(((((.((...(((........((((((((...((.((((.((....(....).))..)))).)).)))))))).........))).)).))))).))...------------ ( -31.23) >DroSec_CAF1 124653 107 + 1 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGC------------ ......(((((..(((((......)))))(((((((...((.((((.((....(....).))..)))).)).)))))))...........)))))..(.(....).)------------ ( -30.30) >DroSim_CAF1 116539 107 + 1 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGC------------ ......(((((..(((((......)))))(((((((...((.((((.((....(....).))..)))).)).)))))))...........)))))..(.(....).)------------ ( -30.30) >DroEre_CAF1 119622 119 + 1 CAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGGCGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGUGGAAGGCAAGGGAAGUGGG ....(((((((.((((((......))))))))))))).(((((.(((((....(....).((...(((........)))..))..............)))))...)))))......... ( -33.30) >DroYak_CAF1 114034 119 + 1 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGCAAAGGAAGUUGG ....(((.(((.(((..(((........((((((((...((.((((.((....(....).))..)))).)).)))))))).........)))...))).)))...)))........... ( -32.33) >DroAna_CAF1 116985 102 + 1 UAAAUACGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAGAAGAAGGAAACGGAAAAGCGGAAGACGACGCACUCAAACAAAAAGAGGGGGCGG----------------- ......((((..((((((......)))))(((((((..(((((.((.......(....)))....)))))..)))))))...............)..)))).----------------- ( -25.61) >consensus UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGC____________ ......(((((.((((((......)))))(((((((...((.((((.......(....).....)))).)).)))))))...............).))))).................. (-26.58 = -26.80 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:26 2006