| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,403,845 – 2,403,944 |
| Length | 99 |
| Max. P | 0.602938 |
| Location | 2,403,845 – 2,403,944 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 89.51 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -13.41 |
| Energy contribution | -14.05 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2403845 99 - 27905053 --------GGCAUAAUUUUAAUUACAAUGUAAAAUAUAAUGACUCC--GCGCUAUUUUCACAUUGUUUGCUUUCACAUUAACGAAGCAAAUUAAUGACAGCCAAGUCCA --------(((............(((((((((((((...((....)--)...)))))).)))))))(((((((.........)))))))..........)))....... ( -17.50) >DroSim_CAF1 109077 99 - 1 --------GGCAUAAUUUUAAUUACAAUGUAAAAUAUAAUGACUAC--GCGCUAUUUUCACAUUGUUUGCUUUCACAUUAACGAAGCAAAUUAAUGACAGCCAAGUCCA --------(((............(((((((((((((...((....)--)...)))))).)))))))(((((((.........)))))))..........)))....... ( -17.10) >DroEre_CAF1 110719 99 - 1 --------GGCAUCAUUUUAAUUACAAUGUAAAAUAUAAUGACUUC--GCGCUAUUUUCACAUUGUUUGCUUUCACAUUAACGAAGCAAAUUAAUGACAGCCCAGCCCA --------(((.(((((......(((((((((((((...((....)--)...)))))).)))))))(((((((.........)))))))...)))))..)))....... ( -18.70) >DroYak_CAF1 105238 96 - 1 --------GGCAUAAUUUUAAUUACAAUGUAAAAUAUAAUGACUUC--GCGCUAUUUUCACAUUGUUUGCUUUCACAUUAACGAAGCAAAUUAAUGAU---UAAGUCCA --------(((.((((((((((((((((((((((((...((....)--)...)))))).))))))).((((((.........)))))))))))).)))---)).))).. ( -17.60) >DroAna_CAF1 108956 107 - 1 GGACGGAUGGCAUAAAUUUAAUUACAAUGUAAAA--UAAUGACCACCGAUGCCAUUUUCACAUUGUUUGCUUUCACAUUAACGAAGCAAAUUAAUGACAGCCAAGUCCA (((((((((((((.......((((..........--))))........)))))))))...(((((((((((((.........)))))))).)))))........)))). ( -25.56) >consensus ________GGCAUAAUUUUAAUUACAAUGUAAAAUAUAAUGACUAC__GCGCUAUUUUCACAUUGUUUGCUUUCACAUUAACGAAGCAAAUUAAUGACAGCCAAGUCCA ........(((......(((((((((((((((((((................)))))).))))))).((((((.........)))))))))))).....)))....... (-13.41 = -14.05 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:23 2006