Locus 65

Sequence ID 3R_DroMel_CAF1
Location 406,802 – 406,922
Length 120
Max. P 0.794149
window117

overview

Window 7

Location 406,802 – 406,922
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 86.94
Mean single sequence MFE -25.37
Consensus MFE -18.49
Energy contribution -18.50
Covariance contribution 0.01
Combinations/Pair 1.19
Mean z-score -2.56
Structure conservation index 0.73
SVM decision value 0.60
SVM RNA-class probability 0.794149
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 406802 120 + 27905053
AAAACGUAUAUAUGCAUUUAACGUUGAGGGCCCAAAUUCAAAUCGUUCUUCUAUACUUUUCUAAGAAGGCAUUUCUCCAAAUUAUUCAUCUGAGUUGGGUUUUUUUCUUAUAUGUAAAAC
............(((((.(((.(..((((((((((.((((....((.(((((...........)))))))((((....))))........))))))))))))))..)))).))))).... ( -20.40)
>DroSec_CAF1 70795 120 + 1
UCCUCAUAUAUAUGCAUUUAAGCCAAAGAGCCAAAACUCAAAUCGUUCUUUUAUACUUUUCUAAAAGAGCAUUUCUCCAAAUUAUUCAUCUGAGUUGGGAUUGCUUCGCAUAUGUAAAAC
......(((((((((....((((....(((......))).(((((((((((((........)))))))))......((((.(((......))).)))))))))))).))))))))).... ( -27.50)
>DroSim_CAF1 67444 120 + 1
UCCUCAUAUAUAUGCAUUUAACGGUGAGAGCCAAAACUCAAAUCGUUCUUUUAUACUUUUCUAAAAGAGCAUUUCUUCAAAUUAUUCAUCUGAGUUGGGAUUGCUUCGCAUAUGUAAAAC
......(((((((((.......(((....)))....(((((...(((((((((........)))))))))..............(((....))))))))........))))))))).... ( -28.20)
>consensus
UCCUCAUAUAUAUGCAUUUAACGCUGAGAGCCAAAACUCAAAUCGUUCUUUUAUACUUUUCUAAAAGAGCAUUUCUCCAAAUUAUUCAUCUGAGUUGGGAUUGCUUCGCAUAUGUAAAAC
......(((((((((............(((......))).(((((((((((((........)))))))))......((((.(((......))).)))))))).....))))))))).... (-18.49 = -18.50 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:04 2006