Locus 6491

Sequence ID 3R_DroMel_CAF1
Location 17,088,414 – 17,088,512
Length 98
Max. P 0.700817
window10561

overview

Window 1

Location 17,088,414 – 17,088,512
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 87.76
Mean single sequence MFE -21.51
Consensus MFE -15.36
Energy contribution -13.80
Covariance contribution -1.56
Combinations/Pair 1.50
Mean z-score -1.95
Structure conservation index 0.71
SVM decision value 0.35
SVM RNA-class probability 0.700817
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17088414 98 - 27905053
UUUCGGUCAGAUUUACUAUUUCUCUUGCUAUUCCAGGAAGCUUUUCUCGACAUUUUGUUGGGAUUUUCGCUUCACUACGCUUAUUCUCCUCCAGUGAC
....(((.(((...........))).))).....(((((((...(((((((.....))))))).....))))).)).((((...........)))).. ( -17.40)
>DroSec_CAF1 877 98 - 1
UUUCGGGCAGAUUUACUAUUUCUCCUGCUAUUCCAGGGAGCUUUUCUCGACCCUUUGUUGGGAUUUUCCCUUCACCAAGUUUAUUCUCCUCCAGUGCC
....((((((..............))))......((((((....(((((((.....)))))))..))))))...))...................... ( -19.94)
>DroSim_CAF1 1222 98 - 1
UUUCGGGCAGAUUUACUAUUUCUCCUGCUAUUCCAGGGAGCUUUUCUCGACCCUUCGUUGGGAUUUUUCCUUCACUAAGUUUAUUCUCCUCCAGUGCC
....(((.(((...(((..(((.((((......)))))))....(((((((.....)))))))..............)))....))))))........ ( -17.90)
>DroEre_CAF1 876 98 - 1
UUUCGGGCAGAUUUACUAUUUUUCCUGCUAUUCUAGGGAGAUUUUCCCGACCCUUUGUUGGGAUUUUUCCUUCAUUAAGUUUAUCCUCCUGCAGUGCC
...((((..(((..(((..((((((((......))))))))...(((((((.....)))))))..............)))..)))..))))....... ( -24.40)
>DroYak_CAF1 2801 98 - 1
UUUCGGGAAGAUUUACUAUUUCUCCUGGUAUUUUGGGGAGAUUUUUCCGACCCUUUGGUGGGAUUUUCCCUUCGCUAAGUUUAUCCUCCUGCAGUUCC
...(((((.(((..(((........((((.....(((((((....(((.(((....))).))).)))))))..)))))))..))).)))))....... ( -27.90)
>consensus
UUUCGGGCAGAUUUACUAUUUCUCCUGCUAUUCCAGGGAGCUUUUCUCGACCCUUUGUUGGGAUUUUCCCUUCACUAAGUUUAUUCUCCUCCAGUGCC
.....((((.............(((((......)))))......(((((((.....)))))))...............................)))) (-15.36 = -13.80 +  -1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:39 2006