Locus 649

Sequence ID 3R_DroMel_CAF1
Location 2,400,292 – 2,400,396
Length 104
Max. P 0.999919
window1029

overview

Window 9

Location 2,400,292 – 2,400,396
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 98.72
Mean single sequence MFE -24.42
Consensus MFE -23.97
Energy contribution -23.83
Covariance contribution -0.14
Combinations/Pair 1.04
Mean z-score -2.47
Structure conservation index 0.98
SVM decision value 4.55
SVM RNA-class probability 0.999919
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2400292 104 - 27905053
UGUCAUUGUGUGUGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC
..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -23.00)
>DroSec_CAF1 113514 104 - 1
UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC
..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90)
>DroSim_CAF1 105541 104 - 1
UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC
..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90)
>DroEre_CAF1 107037 104 - 1
UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC
..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90)
>DroYak_CAF1 101340 104 - 1
UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC
..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90)
>DroAna_CAF1 105029 104 - 1
UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCACAACGAAUUCACAGAAUGCCGCCAACAACAAUGCCAAUAACACAUAGGAUAACACAAAC
((.(((((((((((((.((..(((((((....(((.....))).......)))))))..)).)))))..)).)))))).))....................... ( -23.90)
>consensus
UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC
((((..((((((((((.((..(((((((....(((.....))).......)))))))..)).)))))........((....)).)))))...))))........ (-23.97 = -23.83 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:21 2006