Locus 6472

Sequence ID 3R_DroMel_CAF1
Location 17,031,296 – 17,031,410
Length 114
Max. P 0.805381
window10537

overview

Window 7

Location 17,031,296 – 17,031,410
Length 114
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 82.22
Mean single sequence MFE -36.71
Consensus MFE -25.33
Energy contribution -27.03
Covariance contribution 1.70
Combinations/Pair 1.17
Mean z-score -2.30
Structure conservation index 0.69
SVM decision value 0.63
SVM RNA-class probability 0.805381
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17031296 114 + 27905053
-GCAUACCAAGCCUCCCAAGCCUGCCAAGCGGCAAAAACAA---GACGAAAGAUGGCAAAAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUGCUGCGACGCAAGGCGC
-..................((((((...((((((.......---(((((.(.(((((.....(((((((....)))...)))).))))).)..)))))..))))))...)).)))).. ( -39.20)
>DroSec_CAF1 49622 114 + 1
-GCAUCCCAAGCCUCCCAAGCCUGCCAAGCGGCAAAAACAA---GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCAGCCAUGUCGUCGUCUCUGCUACGACGCAAGGCGC
-((.......(((......(((((((....)))).......---..(....)..))).....(.(((((....))))).)))).(((.((.((((((.......)))))))).))))) ( -37.80)
>DroSim_CAF1 51064 105 + 1
-GCAUCCCA---------AGCCUGCCAAGCGGCAAAAACAA---GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCGUCGUCUCUGCUGCGACGCAAGGCGC
-........---------.((((((...((((((.......---(((((...(((((.....(((((((....)))...)))).))))).))))).....))))))...)).)))).. ( -40.00)
>DroEre_CAF1 50430 114 + 1
-GCAACCAAAGCAUCCUAAGCCUGCCAAGCGGCAAAAACAA---GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUACUGCGACGCAAGGCGC
-((.......)).......(((((((....)))........---.((....(((((((.(..(((((((....)))...))))...).)))))))(((((....))))))).)))).. ( -39.70)
>DroWil_CAF1 66122 100 + 1
AACAU---U---------AGC------AAUGGCAAAACUAAACAGCAAAAAGAUUGCAAAAAGUUGACGGCAACUUUAACAGCGGCCAUGUCGUCGUCAUUGUUGCGUCGCAAGGCCC
.....---(---------(((------((((((..((((.....((((.....))))....))))(((((((................))))))))))))))))).(((....))).. ( -27.89)
>DroYak_CAF1 52574 114 + 1
-GCAAUCAAAGCAUCCUAAGCCUGCCAAACGGCAAAAACAA---GGCGAAAGAAGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUGCUGCGACGCAAGGCGC
-((.......)).......((((((.....((((.......---..(....)..(((.....(((((((....)))...)))).))).))))...(((((....))))))).)))).. ( -35.70)
>consensus
_GCAUCCCAAGC_UCC_AAGCCUGCCAAGCGGCAAAAACAA___GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUGCUGCGACGCAAGGCGC
...................((((((...((((((..........(((((.(.(((((.....(((((((....)))...)))).))))).)..)))))..))))))...)).)))).. (-25.33 = -27.03 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:15 2006