Locus 6470

Sequence ID 3R_DroMel_CAF1
Location 17,021,912 – 17,022,016
Length 104
Max. P 0.933580
window10535

overview

Window 5

Location 17,021,912 – 17,022,016
Length 104
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 74.83
Mean single sequence MFE -18.80
Consensus MFE -10.52
Energy contribution -11.63
Covariance contribution 1.11
Combinations/Pair 1.05
Mean z-score -2.20
Structure conservation index 0.56
SVM decision value 1.23
SVM RNA-class probability 0.933580
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17021912 104 + 27905053
AACUAUAUAACUUAUUUUAACUAUAUACAUUAUAUAUACUAUAUAAACUAUAUAGUCGGAUAUGUAGAACUUCUUACGGUAGA-GUCAGUGGAAUGA-UGACUCAC
..(((((((......((..((((((((..(((((((...)))))))..))))))))..)))))))))..............((-((((.........-)))))).. ( -22.10)
>DroSec_CAF1 40086 82 + 1
----------------------AUAUACUAUAUAUAUACUAUAUAAACUAUCUAGUCGGAUAUGUAGAACUUCUUAUGGAGGAACUCACUGGAAUGACUGACU--C
----------------------.....((((((((..((((.(((...))).))))...))))))))..((((....))))......................--. ( -11.50)
>DroSim_CAF1 41559 82 + 1
----------------------ACAUACUAUAUAUCUACUAUAUAAACUAUAUAGUCGGAUAUGUAGAACUUCUUAUGGAGGAACUCAGUGGAAUGACUCACU--C
----------------------.....((((((((((((((((((...)))))))).))))))))))..((((....))))......(((((......)))))--. ( -22.80)
>consensus
______________________AUAUACUAUAUAUAUACUAUAUAAACUAUAUAGUCGGAUAUGUAGAACUUCUUAUGGAGGAACUCAGUGGAAUGACUGACU__C
...........................((((((((..((((((((...))))))))...))))))))..((((.....))))........................ (-10.52 = -11.63 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:13 2006