Locus 646

Sequence ID 3R_DroMel_CAF1
Location 2,390,635 – 2,390,755
Length 120
Max. P 0.862769
window1023

overview

Window 3

Location 2,390,635 – 2,390,755
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -27.78
Consensus MFE -26.42
Energy contribution -26.02
Covariance contribution -0.40
Combinations/Pair 1.11
Mean z-score -1.25
Structure conservation index 0.95
SVM decision value 0.84
SVM RNA-class probability 0.862769
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2390635 120 - 27905053
GUAUUUUAAGCUGAAUUUAUUUUCUAACUGAGUCUAUUUGAUGCAGCAGCAGUUAGAGCGUUUGAAAUCAAUUAGUAAAAGCUGCUGAUUGGCCUUAUUGGUUGCGUUUAAAAUUGAUUG
..(((((((((...........((((((((.(((.....))).......))))))))(((........(((((((((.....)))))))))(((.....)))))))))))))))...... ( -28.70)
>DroSec_CAF1 103941 120 - 1
GUAUUUUAAGCAGAAUUUAUUUUCUAACUGAGUCUAUUUGAUGCAGCAGCAGUUAGAGCGUUUGGAAUCAAUUAGUGAAAGCUGCUGAUUGGCCUUAUUGGUUGCGUUUAAAAUUUAUUG
..(((((((((((((......))))..(((.(((.....))).)))((((((((...((..(((....)))...))...))))))))...((((.....))))..)))))))))...... ( -28.20)
>DroSim_CAF1 95953 120 - 1
GUAUUUUAAGCAGAAUUUAUUUUCUAACUGAGUCUAUUUGAUGCAGCAGCAGUUAGAGCGUUUGGAAUCAAUUAGUGAAAGCUGCUGAUUGGCCUUAUUGGUUGCGUUUAAAAUUUAUUG
..(((((((((((((......))))..(((.(((.....))).)))((((((((...((..(((....)))...))...))))))))...((((.....))))..)))))))))...... ( -28.20)
>DroEre_CAF1 97632 120 - 1
GUAUUUGAAGCUGAAUUUAUUAUCUAACUGAGUCAAUUCGGUGCAGCAACAGUUAGAGCGUUUGAAAUCAAUUAGCAAAAGCUGCUGAUUGGCCUUAUUGGUUGCGUUUAAAAUUUAUUG
...((((((((((((((.....((.....))...))))))))(((((..((((.((.((.........(((((((((.....))))))))))))).))))))))).))))))........ ( -27.40)
>DroYak_CAF1 91735 120 - 1
GUUUUUUGAGCUGAAUUUAUUUUCUAACUGAGUCAAUUCGGUGCAGCAACAGUUAGAGCGUUUGAAAUCAAUUAGUAAAAGCUGCUGAUUGGCCUUAUUGGUUGCGUUUAAAAUUUAUUG
...((((((((((((((.((((.......)))).))))))))(((((..((((.((.((.........(((((((((.....))))))))))))).)))))))))..))))))....... ( -26.40)
>consensus
GUAUUUUAAGCUGAAUUUAUUUUCUAACUGAGUCUAUUUGAUGCAGCAGCAGUUAGAGCGUUUGAAAUCAAUUAGUAAAAGCUGCUGAUUGGCCUUAUUGGUUGCGUUUAAAAUUUAUUG
..(((((((((...........((((((((.(((.....))).......))))))))(((........(((((((((.....)))))))))(((.....)))))))))))))))...... (-26.42 = -26.02 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:15 2006