| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,906,190 – 16,906,307 |
| Length | 117 |
| Max. P | 0.687286 |
| Location | 16,906,190 – 16,906,307 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 66.28 |
| Mean single sequence MFE | -30.95 |
| Consensus MFE | -11.74 |
| Energy contribution | -11.68 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16906190 117 - 27905053 CUCUCAAAGUCCCGUGGCGGUAACAGCAGGCAUAGCUACUCCACACGCACUGGCCAUGCCCAAGGCAUCCUUGGCCACUGGAUCAUCCUCCGCGGCGCCUACACCCUCUCCAUCG--UC ........((.((((((.((...(((..(((((.((((............)))).)))))(((((...)))))....)))......)).)))))).)).................--.. ( -31.10) >DroSec_CAF1 6927 102 - 1 CUCUCAAAGUCCCGUGGCGGGAACAGUCGGCAUAGCCUCUCCACCCGCACUGGCCAUGCCCAAGGCAUCCUUGGCCACCGGCUCAUCCUC---------------CUCUCCAUCG--UC ........(..(((.((((((...((..(((...))).))...)))))..((((((((((...))))....))))))))))..)......---------------..........--.. ( -29.70) >DroSim_CAF1 6987 102 - 1 CUCUCAAAGUCCCGUGGCGGGAACAGCCGGCAUAGGCUCUCCACCCGCACUGGCCAUGCCCAAGGCAUCCUUGGCCACUGGCUCAUCCUC---------------CUCUCCAUCG--UC .............((((..(((..((((......)))).)))..))))...(((((((.((((((...)))))).)).))))).......---------------..........--.. ( -33.10) >DroEre_CAF1 6989 117 - 1 CUCUCACAGUCCCGUGGCGGGAGCAGCCGGAAUACCUUCUCCCCCUGCACUGACCAUGCCCAAGGCAUCCUUGGCCACUGUUUCGUCCUCCGCCGCGCCCACUUCCUCUCCCUCG--UC .......(((..(((((((((.((((..(((........)))..))))...(((..((.((((((...)))))).))..)))......)))))))))...)))............--.. ( -35.20) >DroAna_CAF1 8626 111 - 1 CUCGCAAAGUCCUGUGACAGGAACUACCGUC---UCCUCUGCAAGUGCAAUCGCCUUGCCCAAGGCCACCAUGGCCAUCAGCUCAUCUCCCACCUCGUCCACCACAUCUGC---C--UC ...(((..((..((.((((((..........---......(((((.((....)))))))....((((.....))))................))).)))))..))...)))---.--.. ( -26.40) >DroPer_CAF1 6521 92 - 1 UGCCCACAGUCCUGUGGCGGCGACAAC---------------AUCUGUGGUUACCAUACCCAAGGCAACCAUGGCCACUGCCUCGCCACCCAC------------CACCACAUCGGGAC .(((.(((....))))))(((((....---------------....((((((.((........)).))))))(((....)))))))).(((..------------.........))).. ( -30.20) >consensus CUCUCAAAGUCCCGUGGCGGGAACAGCCGGCAUAGCCUCUCCACCCGCACUGGCCAUGCCCAAGGCAUCCUUGGCCACUGGCUCAUCCUCC_C____________CUCUCCAUCG__UC .............(((((............................(((.......))).(((((...))))))))))......................................... (-11.74 = -11.68 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:55 2006