| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,861,795 – 16,861,915 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 16,861,795 – 16,861,915 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.33 |
| Mean single sequence MFE | -39.15 |
| Consensus MFE | -31.46 |
| Energy contribution | -29.63 |
| Covariance contribution | -1.83 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16861795 120 - 27905053 UUCGGAAGACAUACGCAAACAGCUUCCCGUCGAUUCGGAUCGAUUCGAUAACAUUGACGCCGAGUUUCGCGUCCUCAUGGAUGAGAUGUCUGUGUCGUCGAACGUGGUGGCGUCCACCAA (((((..((((((.(((...(((((..((((((((((((....)))))....)))))))..)))))((.(((((....))))).))))).)))))).)))))..((((((...)))))). ( -41.20) >DroVir_CAF1 16631 120 - 1 UUCGGAAGAUAUACGCAAACAGCUGCCGGUCGAUUCGGUGCGUUUCGAUAAUAUCGAUGCCGAAUUUCGUAUACUAAUGGAUGAGAUGUCGCUCUCAUCAAAUGUGGUGGCAUCAACGAA .(((...(((((.((.((((.((.(((((.....)))))))))))))...)))))(((((((.....)....((((...(((((((......))))))).....))))))))))..))). ( -37.90) >DroGri_CAF1 18595 120 - 1 UUCGGAAGACAUACGCAAACAGCUCCCCGUCGAUUCGGAACGUUUCGAUAAUAUCGAUGCCGAGUUCCGUAUACUCAUGGAUGAGAUGUCCCUCUCAUCGAAUGUGGUGGCAUCAACGAA ((((((.(((....((.....)).....)))..)))))).((((..(((...)))((((((((((.......))))...(((((((......))))))).........)))))))))).. ( -33.30) >DroWil_CAF1 9623 120 - 1 UUCGGAAGACAUACGCAAACAGCUCCCCGUCGACUCGGUUCGGUUCGAUAAUAUUGAUGCUGAGUUUCGCAUCCUGAUGGACGAAAUGUCCGUUUCGUCCAAUGUGGUAGCAUCUACCAA ...(((.(((....((.....)).....)))(((((((((((((........))))).)))))))).....)))...((((((((((....))))))))))...((((((...)))))). ( -37.70) >DroMoj_CAF1 16756 120 - 1 UUCGGAAGAUAUACGCAAACAGCUGCCGGUCGAUUCGGACCGUUUCGAUAAUAUCGAUGCCGAAUUUCGUAUACUCAUGGAUGAGAUGUCCGUCUCAUCGAAUGUGGUGGCAUCAACCAA ...((..(((((..(((......)))(((((......)))))........)))))(((((((.....)....((((((.((((((((....))))))))..))).)))))))))..)).. ( -38.50) >DroAna_CAF1 14245 120 - 1 UUCGGAAGACAUACGCAAACAGCUCCCCGUCGAUUCGGUGCGCUUCGAUAACAUCGACGCCGAGUUCCGCGUUCUCAUGGACGAGAUGUCCGUCUCGUCGAACGUGGUGGCGUCCACGAA .((....))...((((....(((((..(((((((((((......))))....)))))))..)))))((((((((.....((((((((....))))))))))))))))..))))....... ( -46.30) >consensus UUCGGAAGACAUACGCAAACAGCUCCCCGUCGAUUCGGAGCGUUUCGAUAAUAUCGAUGCCGAGUUUCGCAUACUCAUGGAUGAGAUGUCCGUCUCAUCGAAUGUGGUGGCAUCAACCAA .((....)).....((.....)).....(((((..((...))..)))))......(((((((....((((((.....(.((((((((....)))))))).))))))))))))))...... (-31.46 = -29.63 + -1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:32 2006