Locus 6433

Sequence ID 3R_DroMel_CAF1
Location 16,856,110 – 16,856,230
Length 120
Max. P 0.656786
window10485

overview

Window 5

Location 16,856,110 – 16,856,230
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.56
Mean single sequence MFE -47.13
Consensus MFE -26.70
Energy contribution -26.23
Covariance contribution -0.47
Combinations/Pair 1.41
Mean z-score -2.02
Structure conservation index 0.57
SVM decision value 0.26
SVM RNA-class probability 0.656786
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16856110 120 - 27905053
UCAAGAGCUUUGGCUCGCCGCCAGGUGCCGUCACCAAUGUAACCGCCGCAGUGAUGGUGCUGCUCUCCCAGGGUGGCAAGGUGCCCAAAGAUCGCUCUUGGAAAGCGGCCAAAAUCGCAA
(((((((((((((..(((((((.((..(((((((...(((.......))))))))))..))((((.....)))))))..)))).)))))....))))))))...((((......)))).. ( -46.00)
>DroVir_CAF1 9719 120 - 1
UGAAGAGCUUUGGUUCACCACCGGGCGCGGUUACCAAUGUGACAGCUGCGGUCAUGGUGCUAUUAGCCCCUGGCGGUAAACUGCCCAAGGAUCGCUCCUGGAAGGCGGCUAAAAUUUCCA
....((((....))))..((((((((((((((..(.....)..)))))).))).)))))...((((((((((((((....)))))..((((....))))...))).))))))........ ( -41.30)
>DroGri_CAF1 11327 120 - 1
UUAAAAGCUUUGGUUCUCCGCCGGGCGCGGUUACUAAUGUAACGGCUGCUGUUAUGGUGCUCCUGGCACCUGGCGGCAAGCUGCCCAAAGAUCGCUCCUGGAAGGCAGCCAAAAUCUCCA
........(((((((.((..(((((.((((((((....)))))(((((((((((.(((((.....)))))))))))).))))..........))).)))))..)).)))))))....... ( -50.00)
>DroWil_CAF1 4016 120 - 1
UAAAGAGUUUCGGUUCGCCUCCGGGAGCUGUUACGAAUGUAACGGCUGCUGUAAUGGUUCUACUAUCACCUGGAGGCAAACUGCCCAAAGAUCGCAGCUGGAAGGCAGCUAAAAUUGCAA
..........(((((.((((((((((((((((((....))))))))).......((((......))))))))))))).)))))............(((((.....))))).......... ( -42.70)
>DroMoj_CAF1 11264 120 - 1
UCAAGAGCUUUGGCUCUCCACCGGGUGCGGUGACAAAUGUGACCGCUGCCGUCAUGGUCCUGCUGGCACCUGGGGGCAAGCUGCCCAAGGAUCGAUCCUGGAAAGCGGCCAAAAUUUCCA
........(((((((.(((.(((((((((((.((....)).))))).((((.((......)).))))))))))((((.....)))).((((....)))))))....)))))))....... ( -48.70)
>DroAna_CAF1 8622 120 - 1
UCAAGAGCUUUGGUUCGCCGCCUGGCGCGGUCACCAAUGUGACGGCUGCCGUCAUGGUGCUGCUCUCCCCGGGAGGCAAGUUACCCAAAGACCGCUCCUGGAAGGCGGCCAAAAUCGCCA
....((..((((((.((((.((.((.((((((......(((((((...)))))))((((((((.((((...)))))).)).))))....)))))).)).))..)))))))))).)).... ( -54.10)
>consensus
UCAAGAGCUUUGGUUCGCCGCCGGGCGCGGUUACCAAUGUAACGGCUGCCGUCAUGGUGCUGCUAGCACCUGGAGGCAAGCUGCCCAAAGAUCGCUCCUGGAAGGCGGCCAAAAUCGCCA
........(((((((.....(((((.((((((......(((((.......)))))((((((.(((.....))).))).....)))....)))))).))))).....)))))))....... (-26.70 = -26.23 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:25 2006