Locus 641

Sequence ID 3R_DroMel_CAF1
Location 2,376,458 – 2,376,552
Length 94
Max. P 0.749738
window1015

overview

Window 5

Location 2,376,458 – 2,376,552
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.50
Mean single sequence MFE -26.60
Consensus MFE -18.80
Energy contribution -18.88
Covariance contribution 0.08
Combinations/Pair 1.13
Mean z-score -2.43
Structure conservation index 0.71
SVM decision value 0.47
SVM RNA-class probability 0.749738
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2376458 94 - 27905053
AUCGAAAAGGACAACCAGGAACCAGGAUAUGCAAAUCUCAAGGUUGAGCCUGCAGUGCGGG--CUCAAUUUUGGGGCAUCGUAAAAUUGCAAUUUA
..............((.(....).))...(((((..(((((((((((((((((...)))))--))))))))))))((...))....)))))..... ( -29.50)
>DroSec_CAF1 89065 91 - 1
AUCGGAAAGGACAACCA---ACCAGGAUAUGCAAAUCUCAAGGUUGAGCCUGCAGUGCAGU--CUCAAUUUUGGGGCAUCGUAAAAUUGCAAUUUA
...((...((....)).---.))......(((((..((((((((((((.((((...)))).--))))))))))))((...))....)))))..... ( -23.80)
>DroSim_CAF1 81733 91 - 1
AUCGGAAAGGACAACCA---ACCAGGAUAUGCAAAUCUCAAGGUUGAGCCUGCAGUGCAGG--CUCAAUUUUGGGGCAUCGUAAAAUUGCAAUUUA
...((...((....)).---.))......(((((..(((((((((((((((((...)))))--))))))))))))((...))....)))))..... ( -30.90)
>DroEre_CAF1 83295 87 - 1
AUCGGAAAGGACAAC-------CAGGAUAUGCAAAUCUCAAGGUUGAGCCUGCAGUUAGGG--CUCAAUUUUGGGGCAUCGUAAAAUUGCAAUUUA
........((....)-------)......(((((..(((((((((((((((.......)))--))))))))))))((...))....)))))..... ( -24.90)
>DroYak_CAF1 77209 89 - 1
AUCGGAAAGGACACC-------CAGGAUAUGCAAAUCUCAAGGUUGAGUCUGCAGUUCGGGGCAUCAAUUUUGAGGCCUCGUAAAAUUGCAAUUUA
........(((((((-------..((((......))))...)))...))))((((((((((((.(((....))).))))))...))))))...... ( -23.90)
>consensus
AUCGGAAAGGACAACCA___ACCAGGAUAUGCAAAUCUCAAGGUUGAGCCUGCAGUGCGGG__CUCAAUUUUGGGGCAUCGUAAAAUUGCAAUUUA
.............................(((((..((((((((((((((((.....))))..))))))))))))((...))....)))))..... (-18.80 = -18.88 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:07 2006