Locus 640

Sequence ID 3R_DroMel_CAF1
Location 2,375,187 – 2,375,289
Length 102
Max. P 0.987329
window1014

overview

Window 4

Location 2,375,187 – 2,375,289
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.25
Mean single sequence MFE -42.22
Consensus MFE -23.09
Energy contribution -21.93
Covariance contribution -1.16
Combinations/Pair 1.59
Mean z-score -2.49
Structure conservation index 0.55
SVM decision value 2.08
SVM RNA-class probability 0.987329
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2375187 102 + 27905053
CUGCUGC---------ACCCCCUGCUGCACUCCCUGUUGCACCCCUUGCUGCAGUCCGUGCUGCGGUCCGUGCUGCAGCCCCUGCUGCUCUCCUUGCGG---------AGGGUCAAAGUG
((((.((---------((...((((.((((...((((.(((.....))).))))...)))).))))...)))).)))).((((.((((.......))))---------))))........ ( -42.40)
>DroGri_CAF1 149940 102 + 1
CAGCUGC---------AGUCCGUGCUGUGGACCAUGUUGCGGGCCCUGUUGCGGUCCUUGCUGUGGACCCUGCUGCAGUCAGGGCUGCAAUUCUUGUUG---------CGGCUCCAAAUU
.((((((---------((((((.....)))))((.(((((((.((((((((((((((.......))))).....)))).))))))))))))...)).))---------)))))....... ( -45.50)
>DroSec_CAF1 87788 102 + 1
CUGCUGC---------ACCCCCUGCUGCACUCCCUGUUGCACCCCUUGCUGCAGUCCGUGCUGCGGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG---------CGGGUCAAAGUG
((((.((---------((...((((.((((...((((.(((.....))).))))...)))).))))...)))).))))..((((((((.......))))---------))))........ ( -45.30)
>DroEre_CAF1 81997 102 + 1
CUGCUGC---------ACCCCCUGCUGCACUCCCUGUUGCACACCUUGCUGCACUCCGUGCUGCAGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG---------CGGCUCAAAGUG
((((.((---------((...((((.((((....(((.(((.....))).)))....)))).))))...)))).))))...(((((((.......))))---------)))......... ( -39.40)
>DroWil_CAF1 141034 120 + 1
AUGCUGCAAUCCUUGCGGCCCUUGCUGCAGUCCUUGCUGCGCCCCAUGCUGUGCACCAUGCUGCGCCCCAUGUUGUUCCCCCUGCUGCAGCCCCUGUGGACCCACAUGUGGAUCAAAAUG
..((((((.....))))))....((((((((.......(((...((((..(((((......)))))..)))).))).......))))))))(((((((....)))).).))......... ( -37.84)
>DroYak_CAF1 75924 102 + 1
CUGCUGC---------ACCCCCUGCUGCACACCCUGUUGCACCCCUUGCUGCACUCCGUGCUGCAGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG---------CGGGUCAAAGUG
((((.((---------((...((((.((((....(((.(((.....))).)))....)))).))))...)))).))))..((((((((.......))))---------))))........ ( -42.90)
>consensus
CUGCUGC_________ACCCCCUGCUGCACUCCCUGUUGCACCCCUUGCUGCACUCCGUGCUGCGGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG_________CGGGUCAAAGUG
................((((.((((.((((....(((.(((.....))).)))....)))).)))).((((...(((((....))))).......))))..........))))....... (-23.09 = -21.93 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:06 2006