Locus 64

Sequence ID 3R_DroMel_CAF1
Location 380,922 – 381,015
Length 93
Max. P 0.957263
window116

overview

Window 6

Location 380,922 – 381,015
Length 93
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 76.23
Mean single sequence MFE -23.32
Consensus MFE -8.74
Energy contribution -9.77
Covariance contribution 1.03
Combinations/Pair 1.06
Mean z-score -2.81
Structure conservation index 0.37
SVM decision value 1.48
SVM RNA-class probability 0.957263
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 380922 93 - 27905053
CGAUAAAGCCAG---------GCUACGAGCGAAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA-GAAAUAACAAAUGUGAUUUCCU
.......(((.(---------(((..(.(.((...((((....))))..)).).)...)))).)))...(((((((((((-....)))))))))))....... ( -25.40)
>DroVir_CAF1 73316 88 - 1
UGAAAA---------------GAGACACGCGCAAAAUGAAGACAGAAAGUCACACAAAAGUUGGGUUGACAAAUUUGUGAACAAAUAACAAAUGUGCUUUGCC
......---------------.......(((((.......(((.....)))........((((.(((.(((....))).)))...))))...)))))...... ( -16.60)
>DroSec_CAF1 56270 93 - 1
CGAUAAAGCCAG---------GCUACGAGCGCAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA-GAAAUAAGAAAUGUGAUUUCCU
.......(((.(---------(((..((.(((........)))))...(.....)...)))).)))...(((((((.(((-....))).)))))))....... ( -23.20)
>DroSim_CAF1 56761 93 - 1
CGAUAAAGCCAG---------GCUACGAGCGCAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA-GAAAUAACAAAUGUGAUUUCCU
.......(((.(---------(((..((.(((........)))))...(.....)...)))).)))...(((((((((((-....)))))))))))....... ( -27.10)
>DroEre_CAF1 43018 102 - 1
CGAUAAAGCCAGGUCUGCCAAGCUACGAGCGCUAAUUGAAGCGUCAAAGUCACACAAAAGUCAGACAGACACAUUUGUUA-GAAAUAACAAAUGUGAUUUCUU
......(((..((....))..)))..((.((((......))))))...(((..((....))..)))...(((((((((((-....)))))))))))....... ( -27.40)
>DroMoj_CAF1 60401 85 - 1
UGAA------------------AGACACGCGCGAGAUGGAGACAGAAAGUCACACGAAAGUCGUGCUGACAAAUUUCUGAACAAAUAACAAAUGUGAGUGAUC
....------------------...(((.((((....(....)(((((((((((((.....)))).))))...)))))..............)))).)))... ( -20.20)
>consensus
CGAUAAAGCCAG_________GCUACGAGCGCAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA_GAAAUAACAAAUGUGAUUUCCU
..............................................(((((((......(((.....)))..((((((((.....)))))))))))))))... ( -8.74 =  -9.77 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:03 2006