Locus 639

Sequence ID	3R_DroMel_CAF1
Location	2,370,996 – 2,371,087
Length	91
Max. P	0.874305

overview

Window 3

Location	2,370,996 – 2,371,087
Length	91
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	88.96
Mean single sequence MFE	-29.80
Consensus MFE	-24.04
Energy contribution	-24.68
Covariance contribution	0.64
Combinations/Pair	1.12
Mean z-score	-1.81
Structure conservation index	0.81
SVM decision value	0.88
SVM RNA-class probability	0.874305
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2370996 91 + 27905053
CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAACCGGAA--
(((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....))))))).........-- ( -30.50)
>DroSec_CAF1 83615 91 + 1
CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAUCCGGAA--
(((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....))))))).........-- ( -30.50)
>DroSim_CAF1 76298 91 + 1
CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAUCCGGAA--
(((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....))))))).........-- ( -30.50)
>DroEre_CAF1 77117 93 + 1
CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUGUGCGAAUGUACAGGUGGAGUCCCCUACGGCGAACAAAGUGUGUGGAACCGGAAUA
..(((((((..((((((...((((((((((....)))))))...)))....))))))((((....)).)).....)))))))........... ( -31.50)
>DroYak_CAF1 71720 87 + 1
CACGCACGCAUCUCCGCAAAACAGCACGCAACUUUGUUUGCAAAGGUACAGGUGAAGUUCCCUAUGGCGAACGAAGAGUGC------GGAAUC
..(((((((......))..............((((((((((..(((.((.......))..)))...)))))))))).))))------)..... ( -26.00)
>consensus
CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAACCGGAA__
(((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....)))))))........... (-24.04 = -24.68 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:05 2006