| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,721,177 – 16,721,280 |
| Length | 103 |
| Max. P | 0.619164 |
| Location | 16,721,177 – 16,721,280 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 60.64 |
| Mean single sequence MFE | -34.06 |
| Consensus MFE | -10.44 |
| Energy contribution | -14.12 |
| Covariance contribution | 3.69 |
| Combinations/Pair | 1.22 |
| Mean z-score | -3.34 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.619164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16721177 103 + 27905053 ------CGGCCAAGUGUUGCCAGGCAAAUCCGGUGGCA-UUUCUUAGAA-UCGGAAACGAUUU-AAGAGUUAUGGCAAAACGGGCGUAUCUUAUGACAGCCGUUGUUUGGUU ------..(((((((((..((.((.....))))..)))-))(((((((.-(((....))))))-))))....)))).((((((((...((....))..)))..))))).... ( -34.20) >DroPse_CAF1 38554 102 + 1 UUAAUAUCGCCACAUUUU---UGGCUCAUUUAUUCGCAGCUUUCCAGCUUUUGGAAUCAUUUUGGAGAGCUGC-------UUUGGGUGUCUUGUGACAGCCUUUGUAAGAUA ....((((((((......---))))..........((((((((((((....((....))..))))))))))))-------...((.((((....)))).)).......)))) ( -34.10) >DroYak_CAF1 49480 102 + 1 ------CAAGCCAAGGCUGCCA-GCAAAUCCGGUGCCA-UUGCUUUGAA-UCGGAAACGAUUU-AAGAGUUAUGGCAAAAAGGGCGUAUCUUAUGACAGCCGUUGUUUGGUU ------(((((...(((((.((-.....(((..(((((-(.((((((((-(((....))))))-.))))).))))))....))).........)).)))))...)))))... ( -39.14) >DroPer_CAF1 37858 102 + 1 UUAAUAUGGCCAAAUUUU---UGGCUGAUUUAUUCGCAGCUUUCCAGAAUUCGGAAUCAUUUUGAAGAGCUGC-------UUUGCUUGUCUUGUGACGGCCUUUGUAAGAUA (((....((((.......---.(((.((.....))((((((((.((((((........)))))).))))))))-------...))).(((....)))))))....))).... ( -28.80) >consensus ______CGGCCAAAUGUU___AGGCAAAUCCAGUCGCA_CUUCCCAGAA_UCGGAAACAAUUU_AAGAGCUAC_______UGGGCGUAUCUUAUGACAGCCGUUGUAAGAUA ......................(((..........(((((((((((((..(((....)))))))))))))))).............((((....)))))))........... (-10.44 = -14.12 + 3.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:54 2006