| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,716,842 – 16,716,957 |
| Length | 115 |
| Max. P | 0.991628 |
| Location | 16,716,842 – 16,716,957 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.62 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -27.27 |
| Energy contribution | -26.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16716842 115 + 27905053 CGCCUCUUUAGCUCAGUGGUAGAGCGUUGGUCUCGUAAACCAAAGGCCGUGAGUUCAACCCUCACAGGAGGCAGGUUUCGAAAUAUUAUUUUUGUGCU---CUGUAAUUCCGCU--UUAU .((((.....((((.......)))).(((((.......))))))))).(((((.......))))).(((.((((((..(((((......))))).)).---))))...)))...--.... ( -31.30) >DroPse_CAF1 33643 112 + 1 UGCCUCUUUAGCUCAGUGGUAGAGCGUUGGUCUCGUAAACCAAAGGCCGUGAGUUCAACCCUCACAGGAGGCAAGUGGCAAACUUUCAA--UAGGUUUCAUUCCUUUUUUUCUU------ ((((((((..((((.......))))...(((((..........)))))(((((.......)))))))))))))(((((..(((((....--.))))))))))............------ ( -30.00) >DroPer_CAF1 32804 118 + 1 UGCCUCUUUAGCUCAGUGGUAGAGCGUUGGUCUCGUAAACCAAAGGCCGUGAGUUCAACCCUCACAGGAGGCAAGUGGCAAACUUUCAU--UAGGUUUCUUUCCUUUUUUUUUUCUUUUU ((((((((..((((.......))))...(((((..........)))))(((((.......)))))))))))))...((.((((((....--.)))))))).................... ( -29.70) >consensus UGCCUCUUUAGCUCAGUGGUAGAGCGUUGGUCUCGUAAACCAAAGGCCGUGAGUUCAACCCUCACAGGAGGCAAGUGGCAAACUUUCAU__UAGGUUUC_UUCCUUUUUUUCUU__UU_U .(((((((..((((.......))))...(((((..........)))))(((((.......)))))))))))).......((((((.......))))))...................... (-27.27 = -26.83 + -0.44)
| Location | 16,716,842 – 16,716,957 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.62 |
| Mean single sequence MFE | -30.47 |
| Consensus MFE | -28.95 |
| Energy contribution | -28.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16716842 115 - 27905053 AUAA--AGCGGAAUUACAG---AGCACAAAAAUAAUAUUUCGAAACCUGCCUCCUGUGAGGGUUGAACUCACGGCCUUUGGUUUACGAGACCAACGCUCUACCACUGAGCUAAAGAGGCG ....--..((((((.....---..............))))))......((((((((((((.......)))))))...((((((.....)))))).((((.......))))....))))). ( -31.01) >DroPse_CAF1 33643 112 - 1 ------AAGAAAAAAAGGAAUGAAACCUA--UUGAAAGUUUGCCACUUGCCUCCUGUGAGGGUUGAACUCACGGCCUUUGGUUUACGAGACCAACGCUCUACCACUGAGCUAAAGAGGCA ------.........(((.......))).--....((((.....))))((((((((((((.......)))))))...((((((.....)))))).((((.......))))....))))). ( -30.20) >DroPer_CAF1 32804 118 - 1 AAAAAGAAAAAAAAAAGGAAAGAAACCUA--AUGAAAGUUUGCCACUUGCCUCCUGUGAGGGUUGAACUCACGGCCUUUGGUUUACGAGACCAACGCUCUACCACUGAGCUAAAGAGGCA ...............(((.......))).--....((((.....))))((((((((((((.......)))))))...((((((.....)))))).((((.......))))....))))). ( -30.20) >consensus A_AA__AAAAAAAAAAGGAA_GAAACCUA__AUGAAAGUUUGCCACUUGCCUCCUGUGAGGGUUGAACUCACGGCCUUUGGUUUACGAGACCAACGCUCUACCACUGAGCUAAAGAGGCA ...............................................(((((((((((((.......)))))))...((((((.....)))))).((((.......))))....)))))) (-28.95 = -28.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:52 2006