Locus 6370

Sequence ID 3R_DroMel_CAF1
Location 16,714,163 – 16,714,261
Length 98
Max. P 0.944480
window10383

overview

Window 3

Location 16,714,163 – 16,714,261
Length 98
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 69.96
Mean single sequence MFE -29.73
Consensus MFE -7.44
Energy contribution -6.92
Covariance contribution -0.52
Combinations/Pair 1.26
Mean z-score -2.17
Structure conservation index 0.25
SVM decision value 1.34
SVM RNA-class probability 0.944480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16714163 98 + 27905053
CG--CUCUGGUCCAUAAUG-CUAUCUCUUU--UCGGGGACA-----------------UCCUGUGGAGAGGGCGUUUAAUUUGUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUA
..--...(((((((...((-(((((((((.--.((((....-----------------.))))..))))))..............(((((.....)))))......)))))..))))))) ( -26.40)
>DroPse_CAF1 31001 117 + 1
CG--CUCCGUUCGCUAUGG-UUAUCCCGGUUAUCUGGUAUGGCCUGCAGGGCAUUCCGGCCUGCGGCAUGGGCGUUUAAUUUAUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUU
..--.((((...((((..(-(.(((..((((((((((.(((.(((((.((((......))))...))).)).)))..........))))))))))...))).))..))))...))))... ( -37.30)
>DroYak_CAF1 41959 100 + 1
AGGAGUCUAGUCCAUAAUG-CUAUCUCUUU--UCUGGGGUA-----------------GCCUGUGGAGAGGGCGUUUAAUUUGUUUCAGAUGACUUUUGAUUAUUUUUGCAAUCGGAUUU
..((((((..((((((..(-(((((((...--...))))))-----------------)).))))))((..(((..(((((.(((......)))....)))))....)))..)))))))) ( -28.40)
>DroAna_CAF1 26824 90 + 1
------UUGCCCCAUUAUAUCUAUCUCUGU--UCAU----------------------GCCUGCGGCAUGGGCGUUUAAUUUGUUUUGGACGACUUUUGAUUAUUUUAGCAAUUGAAUUU
------((((........(((.......((--((((----------------------(((...)))))))))((((((......)))))).......))).......))))........ ( -19.26)
>DroPer_CAF1 30111 117 + 1
CG--CUCCGUUCGCUAUGG-UUAUCCCGGUUAUCUGGUAUGGCCUGCAGGGCAUUCUGGCCUGCGGCAUGGGCGUUUAAUUUAUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUU
..--.((((...((((..(-(.(((..((((((((((.(((.(((((.((((......))))...))).)).)))..........))))))))))...))).))..))))...))))... ( -37.30)
>consensus
CG__CUCUGGUCCAUAAUG_CUAUCUCUGU__UCUGGGAUA_________________GCCUGCGGCAUGGGCGUUUAAUUUGUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUU
.....(((..................................................((((.......))))(((.((..((..(((((.....))))).))..)))))....)))... ( -7.44 =  -6.92 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:47 2006