Locus 6353

Sequence ID 3R_DroMel_CAF1
Location 16,647,803 – 16,647,895
Length 92
Max. P 0.553081
window10360

overview

Window 0

Location 16,647,803 – 16,647,895
Length 92
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 77.95
Mean single sequence MFE -25.80
Consensus MFE -17.74
Energy contribution -17.86
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.43
Structure conservation index 0.69
SVM decision value 0.04
SVM RNA-class probability 0.553081
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16647803 92 - 27905053
AGGGUGUCCACGGUAGACCGUAGCUUCAAUCUUUAAAACACCCUAAUUAUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC-----------UAAA----UAUUAGCG
((((.....((((....))))...............((((((((((..((((......))))))))))))))))))..((-----------((..----...)))). ( -26.50)
>DroSec_CAF1 347 92 - 1
AGGGUGUCCACGGUAGACCGUAGCUUCAAUCUUGAAAACACCCUAAUUUUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC-----------UAAA----UAUUAGCG
((((.....((((....))))...((((....))))((((((((((...(((......))).))))))))))))))..((-----------((..----...)))). ( -26.60)
>DroSim_CAF1 348 92 - 1
AGGGUGUCCACAGUAGACCGUAGCUUCAAUCUUGAAAACACCCUAAUUUUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC-----------UAAA----UAUUAGUG
........(((((((.....(((((.(((....((..(((((((((...(((......))).))))))))))).))))))-----------))..----)))).))) ( -23.70)
>DroEre_CAF1 354 103 - 1
AGGGUGUCCAUGGCAGACCGUAAUUUGAAUCCCCGAAAUACCCUAAUUAUGCCCAACUGCACUUGGGGUGUUCCUUCAGGUGUUCAACUGCUAAGCAUA----AACG
.(..(((.(.((((((........(((((..((.((((((((((((...(((......))).)))))))))...))).))..))))))))))).).)))----..). ( -29.50)
>DroYak_CAF1 343 107 - 1
AUGGUGUCCAUGGCAGACCGUAAUUUGAAUCCCCCAAAUACCCUAAUUAUGCCCAACUGCAUUUGCGGUGUUCCCUGAGCUGAUCAACUGCUAACCAAAUAUUAUGG
.((((.....(((((((((((((((((.......))))).........((((......)))).))))))((((...)))).......)))))))))).......... ( -22.70)
>consensus
AGGGUGUCCACGGUAGACCGUAGCUUCAAUCUUCAAAACACCCUAAUUAUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC___________UAAA____UAUUAGCG
((((.....((((....))))...............((((((((((...(((......))).))))))))))))))............................... (-17.74 = -17.86 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:25 2006