| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,348,482 – 2,348,572 |
| Length | 90 |
| Max. P | 0.749242 |
| Location | 2,348,482 – 2,348,572 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -15.83 |
| Energy contribution | -16.50 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2348482 90 + 27905053 AUCUGCAGACUGCACACCG-CCAGGAAAAUUCGAGCAAAAACAAAAUAACUUG---AGCGCCGAAAGGCGGGCCGACAAUCUGUGGGAUGCAUA ...((((..(..((..((.-...)).....(((.((.....(((......)))---..((((....)))).))))).....))..)..)))).. ( -27.30) >DroSec_CAF1 52366 90 + 1 ACCUGCAGACUGCACACCG-CCUGGAAAAUUCGAACAAAAACAAAACAGCUUG---AGCGCCGAGAGGCGGGCCGACAAUCUGUGGGAUGCCUA .((..((((.(((...(((-(((.((....)).................((((---.....))))))))))...).)).))))..))....... ( -26.30) >DroSim_CAF1 52659 90 + 1 ACCUGCAGACUGCACACCG-CCUGGAAAAUUCGAACAAAAACAAAACAACUUG---AGCGCCGAGAGGCGGGCCGACAAUCUGUGGGAUGCCUA .((..((((.(((...(((-(((.((....)).................((((---.....))))))))))...).)).))))..))....... ( -26.60) >DroEre_CAF1 54665 90 + 1 ACCUGCAGACUGCACACCG-CCUGGAAAAUUCAAACAAAAACAAAACAACUUG---AGCGCCGAGCGGCGGGGCAACAAUCUGUGGGAUGCACA .((..((((.(((...(((-((...................(((......)))---.((.....))))))).)))....))))..))....... ( -27.10) >DroYak_CAF1 48957 90 + 1 ACCUGAAGACUGCACACCG-CCUGGAAAAUUCGAACAAAAACAAAUCAACUUG---AGCGCCGAGAGGCGGGUCGACAAUCUGUGGGAUGCAAA ..........((((..(((-(..(((....((((.(.....(((......)))---..((((....))))).))))...)))))))..)))).. ( -24.50) >DroAna_CAF1 50765 82 + 1 UGCUUUGGACUGGCCGGCGUCCUG---------GGCAAAAACAAAACAGCCUCUGAGGCUCCGGAAGG---AGCAACAAUUUGUGAGAUGCAUC ((((..((((........))))..---------))))...........((.(((...(((((....))---))).((.....)).))).))... ( -27.50) >consensus ACCUGCAGACUGCACACCG_CCUGGAAAAUUCGAACAAAAACAAAACAACUUG___AGCGCCGAGAGGCGGGCCGACAAUCUGUGGGAUGCAUA .((((((((.((....((.....)).................................((((....))))......)).))))))))....... (-15.83 = -16.50 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:00 2006