| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,585,083 – 16,585,179 |
| Length | 96 |
| Max. P | 0.614367 |
| Location | 16,585,083 – 16,585,179 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.68 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.38 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16585083 96 + 27905053 ---------CCCCUCA---------------ACUUACUUGAAUUCCAGCUUGACUUUCAGGCUGUCCCAGCCGAAGAAGGGCACCGCAUAGGUCACCAGCCACUUCUUCACAUAUCCAUC ---------....(((---------------(.....))))....(((((((.....)))))))........(((((((((((((.....))).....))).)))))))........... ( -26.80) >DroVir_CAF1 169861 111 + 1 GGCCCU---ACCCUUUU---UAUG---GUUUACUUACUUGAAUUCCAGUUUGACUUUGAGGCUGUCCCACCCAAAGAAGGGCACCGCAUAGGUCACCAACCACUUCUUGACGUAGCCAUG (((...---.(((((((---(..(---((..((...((..((.((......)).))..))...))...)))..)))))))).......((.((((............)))).)))))... ( -24.30) >DroGri_CAF1 207227 108 + 1 UAGCUU---CCCCUUGU------G---CUCUACUCACUUGAAUUCCAGUUUGACUUUGAGGCUGUCCCAGCCAAAGAAGGGCACCGCAUAGGUCACCAGCCACUUCUUCACAUAGCCAUC ..(((.---.....(((------(---......(((.(..(((....)))..)...)))(((((...))))).((((((((((((.....))).....))).)))))))))).))).... ( -23.90) >DroWil_CAF1 163132 120 + 1 GCCCAUUUCCCCCUUUUCUGUUCUGUUGUAUACUCACUUGAAUUCCAGUUUGACUUUCAGACUGUCCCAACCGAAGAAGGGCACCGCAUAGGUCACAAGCCACUUCUUGACAUAACCAUC ...................(((.((((..................(((((((.....))))))).........((((((((((((.....))).....))).)))))))))).))).... ( -24.20) >DroMoj_CAF1 142726 116 + 1 GCCCCU---ACCCUAAUGCGUAUG-AAAUCUACUCACUUGAAUUCCAGUUUGACUUUGAGGCUGUCCCAGCCAAAGAAGGGCACCGCAUAGGUUAUCAGCCACUUCUUGACAUAUCCAUU ......---.....((((.(((((-........(((.(..(((....)))..)...)))(((((...))))).((((((((((((.....))).....))).))))))..))))).)))) ( -26.00) >DroAna_CAF1 138710 104 + 1 ---------CCCCUUUAUUGUGG-------CACUCACUUGAAUUCCAGCUUGACUUUGAGGCUGUCCCAGCCGAAGAAGGGCACCGCAUAGGUCACCAGCCACUUCUUCACGUAGCCGUC ---------............((-------(((..........................(((((...)))))(((((((((((((.....))).....))).)))))))..)).)))... ( -29.50) >consensus G_CC_U___CCCCUUUU___U__G____U_UACUCACUUGAAUUCCAGUUUGACUUUGAGGCUGUCCCAGCCAAAGAAGGGCACCGCAUAGGUCACCAGCCACUUCUUCACAUAGCCAUC .............................................((((((.......)))))).........((((((((((((.....))).....))).))))))............ (-16.58 = -16.38 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:01 2006