Locus 6334

Sequence ID 3R_DroMel_CAF1
Location 16,575,033 – 16,575,131
Length 98
Max. P 0.880307
window10330

overview

Window 0

Location 16,575,033 – 16,575,131
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 78.58
Mean single sequence MFE -39.53
Consensus MFE -34.72
Energy contribution -33.87
Covariance contribution -0.86
Combinations/Pair 1.29
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 0.91
SVM RNA-class probability 0.880307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16575033 98 + 27905053
AAAGCCGAACCCUGAGCGGCGUGGUCUUGGCCACAUUGGCUGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCGCCGUUCGCCCACAUGGGAUGU
.....(((((.((((((((((((((((..(((.....)))..)....)))))))))))..))))((((.......)))))))))(((....))).... ( -39.70)
>DroPse_CAF1 132943 85 + 1
AGAGUCGGACUCUGAGCGGCGUCGUUCUGGCCACACUGGCCGGCGCCGGCUAUGCCGUGUUCCGGGUAAGUCC--------UUGCCUCC-----GUGU
.....((((..(.((((((((((.....((((.....))))))))))(((...)))..)))).)(((((....--------))))))))-----)... ( -32.70)
>DroSec_CAF1 131248 98 + 1
AAAGCCGAACCCUAAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCGUCGCCCGCCCACAUGGAAUGU
...((...((((((((((((((((((((((((.....))))))....)))))))))))..)))))))..))..(((((.(........)))))).... ( -40.90)
>DroEre_CAF1 135419 90 + 1
AAAGCCGAACCCUGAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCGGCACUCGCCCUC--------G
...((((.((((((((((((((((((((((((.....))))))....)))))))))))..)))))))((....))))))..........--------. ( -45.50)
>DroYak_CAF1 131425 98 + 1
AAAGCCGAACCCUGAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUACUCCGUCCCUCGCCCACAUGGGAUGU
...((...((((((((((((((((((((((((.....))))))....)))))))))))..)))))))..))....((((((..........)))))). ( -46.30)
>DroPer_CAF1 140254 85 + 1
AGAGUCGGACUCUGAGCGGCGUCGUUCUGGCCACACUGGCCGGCGCCGGCUAUGCCGUGUUCCGGGUAAGUCC--------UUGCCUUC-----GUGU
((((.....))))((((((((((.....((((.....))))))))))(((...)))..)))).((((((....--------))))))..-----.... ( -32.10)
>consensus
AAAGCCGAACCCUGAGCGGCGUGGUCCUGGCCACAUUGGCCGGAGCUGGCUAUGCCGUGUUUAGGGUGAGUAAUCCG_C_CUCGCCCAC_____AUGU
......((((.....(((((((((((((((((.....))))))....))))))))))))))).(((((((..........)))))))........... (-34.72 = -33.87 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:57 2006