| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,553,278 – 16,553,377 |
| Length | 99 |
| Max. P | 0.964114 |
| Location | 16,553,278 – 16,553,377 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.96 |
| Mean single sequence MFE | -18.26 |
| Consensus MFE | -9.88 |
| Energy contribution | -9.68 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.964114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16553278 99 + 27905053 UUUGAUUGUUCCCAUUAGCAUUUU--CUUAUUUUG--UACUUUUUCCGGCACGAGUACGA-GUACUCCAUCAUUUCGUUGCUGUACAAACACGAAUAAUCAAAU (((((((((((.............--......(((--(((((..........))))))))-((((..((.(.....).))..))))......))))))))))). ( -20.80) >DroSec_CAF1 109333 99 + 1 UUUGAUUGUUCCCAUCAGCUUUUU--CUUAUUUCA--C-UUUUUUCCGGUACGAGUACGAAGUACUCCAUCAUUUCGCUGCUGUACAAACACGAAUAAUCAAAU (((((((((((.............--.........--(-........)((((.((((((((((........)))))).))))))))......))))))))))). ( -20.30) >DroSim_CAF1 113578 99 + 1 UUUGAUUGUUCCCAUCAGCUUUUU--CUUAUUUCA--C-UUUUUUCCGGUACGAGUACGAAGUACUCCAUCAUUUCGUUGCUGUACAAACACGAAUAAUCAAAU (((((((((((.............--.........--(-........)((((.((((((((((........)))))).))))))))......))))))))))). ( -20.30) >DroEre_CAF1 112229 86 + 1 UUUGAUUGUUCCCAUCAGCGUUUU--CUUAUUUUA--U-UUUUUUCCG-------------GUACUCCAUCACUUCGUUGCUGUACAAACACGAAUAAUCAAAU (((((((((((....(((((....--)........--.-........(-------------(....))...........)))).........))))))))))). ( -12.82) >DroYak_CAF1 103737 92 + 1 UUUGAUUUUUCCCAUCACCAUUUU--GUUAUUUUA--U-UUUUUUCCGCUACUC-------GUACUCCAUCAUUUUGUUGCUGUACAAACACGAAUAAUCAAAU (((((((.(((.((.........)--)........--.-...............-------((((..((.(.....).))..))))......))).))))))). ( -9.10) >DroPer_CAF1 112302 89 + 1 UUUGAUUGUUGCCAGCAGAGUUUUUCCUUGCCUCUUCU-GUUUGUCUGG-----------CGUUUCUCGUCAUU---CUGCUGUGCAAACGGGAAUAAUCAAAU ((((((((((.((((((((((.......((((......-........))-----------)).........)))---)))))((....)))).)))))))))). ( -26.23) >consensus UUUGAUUGUUCCCAUCAGCAUUUU__CUUAUUUCA__U_UUUUUUCCGGUACGA_______GUACUCCAUCAUUUCGUUGCUGUACAAACACGAAUAAUCAAAU (((((((((((.....((........)).................................((((..((.........))..))))......))))))))))). ( -9.88 = -9.68 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:48 2006