Locus 6326

Sequence ID 3R_DroMel_CAF1
Location 16,530,848 – 16,530,949
Length 101
Max. P 0.931555
window10318

overview

Window 8

Location 16,530,848 – 16,530,949
Length 101
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 90.14
Mean single sequence MFE -39.50
Consensus MFE -31.50
Energy contribution -31.34
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -2.00
Structure conservation index 0.80
SVM decision value 1.21
SVM RNA-class probability 0.931555
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16530848 101 - 27905053
UCCUAGUUGUGUGGCCAUAGCUGU------GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGACGGCAGGGCGAAUGGUGAAUUUGUCCCCAG
.....(((((.((((...((.(((------((....(((((((((((...))))))).)))).)))))))..))))))))).((((((((.....)))))))).... ( -40.20)
>DroSec_CAF1 86399 101 - 1
UCCUAGUUGUGUGGCCGUAGCUGU------GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGAUGGCAGGGCGAACGGUGAAUUUGUCCCCAG
.....((((((..((.(((((...------......))))).))..))))))..(((.(((...(((..((((((........))))))..)))...)))....))) ( -38.00)
>DroSim_CAF1 91045 101 - 1
UCCUAGUUGUGUGGCCAUAGCUGU------GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGAUGCCAGGGCGAAUGGUGAAUUUGUCCCCAG
....(((((((....)))))))((------((....(((((((((((...))))))).)))).))))..((((((........))))))(((.((.....)).))). ( -37.80)
>DroEre_CAF1 89029 101 - 1
UCCUAGUUGUGUGGCCAUAGCUGU------GUUGUUGCUGCAGCUGCUCAGCAGCUGUCAGUUGCACAUUUCGCCGUCGGCAAGCGGAAUGGCGAAUUUGAGCCCAU
........(((.(((((....(((------((....(((((((((((...))))))).)))).))))).(((((((((.(....).).))))))))..)).)))))) ( -40.60)
>DroYak_CAF1 84109 107 - 1
UCCUAGUUGUGUGGCCAUAGCUGUAGCUGAGUUGUUGCAGCAGCUGCUCAGCAGCUGUCAGUUGCACAUUUCGCCGACAGCAAGCGGAAUGGCGAAUUUGAGCCCAU
........(((.(((....((((((((......))))))))((((((...)))))).(((.((((.((((((((.........))))))))))))...))))))))) ( -40.90)
>consensus
UCCUAGUUGUGUGGCCAUAGCUGU______GUUGUUGCUGCAGCUGCACAGCAGCUGUCAGUUGCACAUUUCGCCGACGGCAGGGCGAAUGGUGAAUUUGUCCCCAG
.......((((..((.((((((((......(((((....)))))......))))))))..))..)))).(((((((.(((....)))..)))))))........... (-31.50 = -31.34 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:45 2006