| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,329,022 – 2,329,128 |
| Length | 106 |
| Max. P | 0.891723 |
| Location | 2,329,022 – 2,329,128 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.57 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.84 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.891723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2329022 106 - 27905053 ACAGAGCACGCAUUGAUUGCAUUUCGGUAUUCUUCUAUUAUUUUAUGUAAUGGAAGGUACAC------CUGAAAAACUCU-AUCUAUGUUUUCAUAUCCUGAGUUCAUUUAAG-- ..((((...(((.....))).(((((((..(((((((((((.....)))))))))))...))------).))))..))))-....(((..((((.....))))..))).....-- ( -25.00) >DroSec_CAF1 34772 107 - 1 ACGGAGCACGCAUUGAUUGCAU-CCGGUAUUCUUCUAUUAUUUUAAGUAAUGGAAGGUACAC------CUGAAUAACUCU-AUCUAUAUUUUCAUAUCCUGAGUUCAUUCAAACU .((((....(((.....))).)-)))((((.((((((((((.....))))))))))))))..------.((((((((((.-...(((......)))....))))).))))).... ( -27.50) >DroSim_CAF1 34966 107 - 1 ACGGAGCACGCAUUGAUUGCAU-CCGGUAUUCUUCUAUUAUUUUAAGUAAUGGAAGGUACAC------CUGAAUAACUCU-AUCUAUAUUUUCAUAUCCUGAGUUCAUUCAAACU .((((....(((.....))).)-)))((((.((((((((((.....))))))))))))))..------.((((((((((.-...(((......)))....))))).))))).... ( -27.50) >DroEre_CAF1 40106 103 - 1 ACUGAGCACGCAUUGAUUUUAU-UCGGCAUUCUUCUAUUAUUUUAUGUAAUGGCAUGUACACCGGUUCCUGAAUAACUGU-AACUA--------AGCCCUGAGUUCAUUUAAG-- ..(((((.......((......-))(((......(((((((.....)))))))....((((...(((....)))...)))-)....--------.)))....)))))......-- ( -15.20) >DroYak_CAF1 34515 104 - 1 ACCGAGCCCGCAUUGAUUGUAU-UCGGUAUCAUUCUAUUAUUUUAACUAAUGGAAGGUACACCGGUUGCUAAAUAACUCCAAACUU--------UACCCGGAGUUUAUUUAAA-- ((((.....(((.....)))..-...(((((.((((((((.......)))))))))))))..))))...(((((((((((......--------.....)))).)))))))..-- ( -23.30) >consensus ACGGAGCACGCAUUGAUUGCAU_UCGGUAUUCUUCUAUUAUUUUAAGUAAUGGAAGGUACAC______CUGAAUAACUCU_AUCUAU_UUUUCAUAUCCUGAGUUCAUUUAAA__ .........(((.....)))......(((.(((((((((((.....)))))))))))))).........((((((((((.....................))))).))))).... (-14.04 = -14.84 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:56 2006