Locus 631

Sequence ID 3R_DroMel_CAF1
Location 2,325,834 – 2,325,942
Length 108
Max. P 0.638717
window1002

overview

Window 2

Location 2,325,834 – 2,325,942
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 89.81
Mean single sequence MFE -24.38
Consensus MFE -17.73
Energy contribution -19.48
Covariance contribution 1.75
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.73
SVM decision value 0.22
SVM RNA-class probability 0.638717
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2325834 108 - 27905053
UCAUUUUGCCCAUAUAUUUAUGGAAGCAAACUGUACGAGGACAAACACUGCCAAAUAUAUUCAUGAAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC
(((.((((((((((....)))))..)))))((((((((....(((((((..(((((.(((.((((...))))))).)))))..))))))))))))))).....))).. ( -27.80)
>DroSec_CAF1 31606 108 - 1
UCAUUUUGCCCAUAUAUUUAUGGAAGCAAACUGUACGAGGACAAACACUGCCAAAUAUAUUCAAGCAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC
(((.((((((((((....)))))..)))))((((((((....(((((((..(((((.(((.((.......))))).)))))..))))))))))))))).....))).. ( -24.70)
>DroSim_CAF1 31801 108 - 1
UCAUUUUGCCCAUAUAUUUAUGGGAGCAAACUGUACGAGGACAAACAUUGCCAAAUAUAUUCAUGAAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC
(((.....((((((....)))))).((...(((((((((((((....((..(((((.(((.((((...))))))).))))).)).))))))))))))).))..))).. ( -26.50)
>DroEre_CAF1 37097 101 - 1
-------GCUUCUACAUUUAUGAAAGCAAACUGCACGAGGACAAACACUGCCAAAUAUAUUCAUGAAUCUUGGUAAAUUUUUAAGUAUUUUUGUAAGGAGCCUUGAAC
-------(((((((((((((((((.((.....))....((.((.....)))).......)))))))).(((((.......)))))......))).))))))....... ( -18.50)
>consensus
UCAUUUUGCCCAUAUAUUUAUGGAAGCAAACUGUACGAGGACAAACACUGCCAAAUAUAUUCAUGAAUCAUGGUAAAUUUGAAAGUGUUUUUGUAUGGAGCCUUGAAC
....((((((((((....)))))..)))))((((((((....(((((((..(((((.(((.((((...))))))).)))))..))))))))))))))).......... (-17.73 = -19.48 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:55 2006