Locus 6305

Sequence ID 3R_DroMel_CAF1
Location 16,460,689 – 16,460,780
Length 91
Max. P 0.991194
window10286

overview

Window 6

Location 16,460,689 – 16,460,780
Length 91
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 68.86
Mean single sequence MFE -14.31
Consensus MFE -7.46
Energy contribution -7.50
Covariance contribution 0.04
Combinations/Pair 1.08
Mean z-score -2.25
Structure conservation index 0.52
SVM decision value 2.25
SVM RNA-class probability 0.991194
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16460689 91 - 27905053
CUUGUCAACUCAACAACAGUAAUAUCGAUAUUAUUUAAAUCAGUUAAGCAG--UGAAUCACUAUCGACUGUUACUUUUUGUUGAAUUUUAU-UU
.........(((((((.(((((((((((((..(((((...(......)...--)))))...)))))).)))))))..))))))).......-.. ( -18.20)
>DroSec_CAF1 16659 86 - 1
CUUGCCAACUUUCCAACAGUAAUAUCGAUAUUAUUAAAAUCAGUUAAGCAGUUUAAAUCACUAUCGACUGUUAUUUGUUUUU-------AU-UA
..............((((((((((((((((..(((.((((..........)))).)))...)))))).))))).)))))...-------..-.. (  -8.30)
>DroSim_CAF1 17541 86 - 1
CUUGCCAACUUUCCAACAGUAAUAUCGAUAUUAUUAAAAUCAGUUAAGCAGCUUAAAUCACUAUCGACUGUUACUUGUUGUU-------AU-UA
.............(((((((((((((((((...........((((....))))........)))))).)))))).)))))..-------..-.. ( -14.01)
>DroEre_CAF1 16875 76 - 1
CUUGCAGAUUUCCCAACAGUAAUAUCGAUAUUG------------------CUUAACUCACUAUCGACUGUUACUUAUUUUUGCAUUUUAUUUU
..((((((.........(((((((((((((.((------------------.......)).)))))).)))))))....))))))......... ( -14.62)
>DroYak_CAF1 17675 76 - 1
CUAGCAGAUUUGCCAACAGUAAUAUCGAUAAUG------------------CUUACAUUUUGAUCGACUGUUACUUAUAUUUGCACUUAAUUUA
...((((((.....((((((...(((((.((((------------------....)))))))))..))))))......)))))).......... ( -16.40)
>consensus
CUUGCCAACUUUCCAACAGUAAUAUCGAUAUUAUU_AAAUCAGUUAAGCAGCUUAAAUCACUAUCGACUGUUACUUAUUUUUG_A_UU_AU_UA
.................(((((((((((((...............................)))))).)))))))................... ( -7.46 =  -7.50 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:15 2006