Locus 630

Sequence ID 3R_DroMel_CAF1
Location 2,325,137 – 2,325,231
Length 94
Max. P 0.610676
window1001

overview

Window 1

Location 2,325,137 – 2,325,231
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 91.38
Mean single sequence MFE -21.00
Consensus MFE -18.10
Energy contribution -18.10
Covariance contribution -0.00
Combinations/Pair 1.19
Mean z-score -1.27
Structure conservation index 0.86
SVM decision value 0.16
SVM RNA-class probability 0.610676
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2325137 94 - 27905053
AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUAUUAUGAUUAUACAGUCGCGGAAGUAA
.....(((((((((....((.((......)).)).)))))))))........(((..((((.(((((((.......))))))).))))..))). ( -19.00)
>DroSec_CAF1 30919 94 - 1
AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUACUAUGAUUAUACAGUCGCGGCGGCAA
.....(((((((((....((.((......)).)).)))))))))........((((.((((.((((((.((....)))))))).)))).)))). ( -23.10)
>DroSim_CAF1 31109 94 - 1
AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUAUUAUGAUUAUACAGUCGCGGCGGCAA
.....(((((((((....((.((......)).)).)))))))))........((((.((((.(((((((.......))))))).)))).)))). ( -25.00)
>DroEre_CAF1 36429 94 - 1
AAACACAAUAAAUCAUAAAAGGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGUCGCUGUUUCUGUAUUAUGAUUAUACACUCGCGGCAACGA
.....(((((((((...((.((.......)).)).)))))))))........(((.(((((...(((((.......)))))...))))).))). ( -19.80)
>DroYak_CAF1 30648 93 - 1
AAACACAAUAAAUCAUAAAAGGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGUCCUUGCUU-UGUAUUAUGUUUUUACAGUCGCGGAAACGA
((((((((((((((...((.((.......)).)).)))))))))(((..(((......)))..-)))....))))).........((....)). ( -18.10)
>consensus
AAACACAAUAAAUCAUAAAAAGGAGUCUGCCAUUGGGUUUAUUGAUAUUGCAUGCCCUUGCUAUUGUAUUAUGAUUAUACAGUCGCGGCAGCAA
.....(((((((((....((.((......)).)).)))))))))........(((..((((.(((((((.......))))))).))))..))). (-18.10 = -18.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:53 2006