Locus 63

Sequence ID 3R_DroMel_CAF1
Location 376,218 – 376,331
Length 113
Max. P 0.638924
window115

overview

Window 5

Location 376,218 – 376,331
Length 113
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 85.76
Mean single sequence MFE -27.55
Consensus MFE -20.11
Energy contribution -19.93
Covariance contribution -0.19
Combinations/Pair 1.24
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value 0.22
SVM RNA-class probability 0.638924
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 376218 113 + 27905053
AAAGUAUCCUGGUGCCAGAAUAAUUGGCGUACGUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGAAAUUGUUAUCUUUGAAAGAAUUUGAUGCUAAGAACUUUCAAA-
(((((.((.((((..((((.......(((.(((((....)))))..)))..(((..(((.((((...((....)))))).)))..)))...))))..)))).)))))))....- ( -21.80)
>DroSec_CAF1 51047 113 + 1
AAAGUAUCUUGGUGCCAGAAUAAUUGGCGUACAUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGGAAUUGUUAUCUUUGAGAGAAUUUGAUGCCAAGAACUUUUAAA-
(((((.(((((((..((((....(..((....((((((........))))))......))..).((((((((.......))))))))....))))..))))))))))))....- ( -33.40)
>DroSim_CAF1 51230 113 + 1
AAAGUAUCUUGGUGCCAGAAUAAUUGGCGUACAUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGAAAUUGUUAUCUUUGAGAGAAUUUGAUGCCAAGAACUUUUAAA-
(((((.(((((((..((((....(..((....((((((........))))))......))..).(((((((........)).)))))....))))..))))))))))))....- ( -29.30)
>DroEre_CAF1 38310 114 + 1
AAAGCUUCCUGGUGCCAGAAUAUCUGGCCUACAUUGCGUAACACUUUCUAGUUUUGAAGCUGACCGGAACAAUUUUUUAUCUUUGUAGUUACUUGAUGCUAAGGUCUUGCAAGC
...((..(((((.(((((.....))))))).(((((.(((((....((..(((........)))..))((((..........)))).))))).)))))...)))....)).... ( -25.70)
>consensus
AAAGUAUCCUGGUGCCAGAAUAAUUGGCGUACAUUGCAUAACGUUUUGCAGUUUUGAAGCUGACCUCAAGAAAUUGUUAUCUUUGAAAGAAUUUGAUGCCAAGAACUUUCAAA_
.((((.((((((((((((.....)))))...((..(.(((((((((((..(((........)))..)))))...)))))))..))............)))))))))))...... (-20.11 = -19.93 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:02 2006