| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,445,070 – 16,445,181 |
| Length | 111 |
| Max. P | 0.973971 |
| Location | 16,445,070 – 16,445,181 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.43 |
| Mean single sequence MFE | -40.19 |
| Consensus MFE | -23.36 |
| Energy contribution | -24.36 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.973971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16445070 111 + 27905053 CAAAGCACUUUGAUCCCAUGGCCGUUGCGGCUGCAGCCGCCAAUCUUCAAAUCCAAGGCCUGAUGCAAUCGCAGGCAGUGGCUGCCGCCGUCGCCGCCAAUCAGCAGA---CUC------ .......(((((((....((((.((.(((((.((((((((....(((.......)))(((((.((....))))))).)))))))).))))).)).))))))))).)).---...------ ( -44.00) >DroVir_CAF1 1167 111 + 1 CCAAACACUUUGAUCCAAUGGCAGUUGCCGCAGCUGCAGCCAAUUUGCAAAUUCAAGGCAUGAUGCAGUCGCAAGCUGUGGCCGCGGCUGUGGCCUCCAAUCAACAGC---AAC------ .........(((((....(((.((..(((((((((((.(((....(((.........)))....((((.(....)))))))).)))))))))))))))))))))....---...------ ( -41.00) >DroWil_CAF1 1120 117 + 1 CCAAACACUUUGAUCCCAUGGCUGUUGCUGCUGCAGCAGCUAAUCUGCAAAUUCAAGGCCUAAUGCAGUCCCAAGCGGUAGCCGCUGCUGUGGCAGCGAAUCAACAAC---AGCAACAAC ....................(((((((((((..(((((((....(((((..............)))))......((....)).)))))))..)))))(......))))---)))...... ( -40.04) >DroMoj_CAF1 1038 111 + 1 CCAAGCAUUUUGACCCAAUGGCUGUUGCAGCAGCAGCUGCCAAUUUGCAAAUUCAAGGCAUGAUGCAGUCACAAGCGGUGGCUGCAGCUGUCGCCUCUAAUCAGCAAC---AGC------ ....((............((((.(((((....))))).))))..((((..(((..(((((((.(((((((((.....)))))))))..))).))))..)))..)))).---.))------ ( -39.30) >DroAna_CAF1 1017 114 + 1 CCAAACACUUUGAUCCAAUGGCCGUGGCAGCUGCUGCUGCCAAUCUCCAGAUUCAGGGUCUCAUGCAAUCCCAAGCAGUGGCCGCCGCCGUGGCAGCCAACCAGCAACAACCUU------ ......(((((((.....(((...(((((((....)))))))....)))...)))))))...............((..((((.(((.....))).))))....)).........------ ( -36.10) >DroPer_CAF1 1162 111 + 1 CUAAGCACUUUGAUCCCAUGGCCGUGGCCGCAGCAGCAGCCAAUUUACAGAUCCAGGGACUAAUGCAAUCGCAGGCAGUGGCCGCUGCCGUGGCCGCAAAUCAGCAGC---CGA------ ....((..((((...(((((((.((((((((....)).(((.......((.((....))))..(((....))))))...)))))).)))))))...))))...))...---...------ ( -40.70) >consensus CCAAACACUUUGAUCCAAUGGCCGUUGCAGCAGCAGCAGCCAAUCUGCAAAUUCAAGGCCUGAUGCAAUCGCAAGCAGUGGCCGCCGCCGUGGCCGCCAAUCAGCAAC___AGC______ .......((((((.....((((.(((((....))))).))))..........)))))).....(((........)))((((((((....))))))))....................... (-23.36 = -24.36 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:04 2006